168 related articles for article (PubMed ID: 38244574)
1. Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and mice.
Daenekas B; Pérez E; Boniolo F; Stefan S; Benfatto S; Sill M; Sturm D; Jones DTW; Capper D; Zapatka M; Hovestadt V
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38244574
[TBL] [Abstract][Full Text] [Related]
2. An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays.
Mah CK; Mesirov JP; Chavez L
F1000Res; 2018; 7():. PubMed ID: 31105932
[TBL] [Abstract][Full Text] [Related]
3. Minimum error calibration and normalization for genomic copy number analysis.
Gao B; Baudis M
Genomics; 2020 Sep; 112(5):3331-3341. PubMed ID: 32413400
[TBL] [Abstract][Full Text] [Related]
4. Critical evaluation of copy number variant calling methods using DNA methylation.
Kilaru V; Knight AK; Katrinli S; Cobb D; Lori A; Gillespie CF; Maihofer AX; Nievergelt CM; Dunlop AL; Conneely KN; Smith AK
Genet Epidemiol; 2020 Mar; 44(2):148-158. PubMed ID: 31737926
[TBL] [Abstract][Full Text] [Related]
5. WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing.
Holt C; Losic B; Pai D; Zhao Z; Trinh Q; Syam S; Arshadi N; Jang GH; Ali J; Beck T; McPherson J; Muthuswamy LB
Bioinformatics; 2014 Mar; 30(6):768-74. PubMed ID: 24192544
[TBL] [Abstract][Full Text] [Related]
6. Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes.
Khalil AIS; Khyriem C; Chattopadhyay A; Sanyal A
BMC Bioinformatics; 2020 Apr; 21(1):147. PubMed ID: 32299346
[TBL] [Abstract][Full Text] [Related]
7. COKGEN: a software for the identification of rare copy number variation from SNP microarrays.
Yavaş G; Koyutürk M; Ozsoyoğlu M; Gould MP; Laframboise T
Pac Symp Biocomput; 2010; ():371-82. PubMed ID: 19908389
[TBL] [Abstract][Full Text] [Related]
8. CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online.
Macnee M; Pérez-Palma E; Brünger T; Klöckner C; Platzer K; Stefanski A; Montanucci L; Bayat A; Radtke M; Collins RL; Talkowski M; Blankenberg D; Møller RS; Lemke JR; Nothnagel M; May P; Lal D
Bioinformatics; 2023 May; 39(5):. PubMed ID: 37104749
[TBL] [Abstract][Full Text] [Related]
9. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
[TBL] [Abstract][Full Text] [Related]
10. Tangent normalization for somatic copy-number inference in cancer genome analysis.
Gao GF; Oh C; Saksena G; Deng D; Westlake LC; Hill BA; Reich M; Schumacher SE; Berger AC; Carter SL; Cherniack AD; Meyerson M; Tabak B; Beroukhim R; Getz G
Bioinformatics; 2022 Oct; 38(20):4677-4686. PubMed ID: 36040167
[TBL] [Abstract][Full Text] [Related]
11. Fast detection of de novo copy number variants from SNP arrays for case-parent trios.
Scharpf RB; Beaty TH; Schwender H; Younkin SG; Scott AF; Ruczinski I
BMC Bioinformatics; 2012 Dec; 13():330. PubMed ID: 23234608
[TBL] [Abstract][Full Text] [Related]
12. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
Wang C; Evans JM; Bhagwate AV; Prodduturi N; Sarangi V; Middha M; Sicotte H; Vedell PT; Hart SN; Oliver GR; Kocher JP; Maurer MJ; Novak AJ; Slager SL; Cerhan JR; Asmann YW
Bioinformatics; 2014 Sep; 30(18):2678-80. PubMed ID: 24876377
[TBL] [Abstract][Full Text] [Related]
13. Evaluation of copy number variation detection for a SNP array platform.
Zhang X; Du R; Li S; Zhang F; Jin L; Wang H
BMC Bioinformatics; 2014 Feb; 15():50. PubMed ID: 24555668
[TBL] [Abstract][Full Text] [Related]
14. Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort.
Valsesia A; Stevenson BJ; Waterworth D; Mooser V; Vollenweider P; Waeber G; Jongeneel CV; Beckmann JS; Kutalik Z; Bergmann S
BMC Genomics; 2012 Jun; 13():241. PubMed ID: 22702538
[TBL] [Abstract][Full Text] [Related]
15. Detecting large copy number variants using exome genotyping arrays in a large Swedish schizophrenia sample.
Szatkiewicz JP; Neale BM; O'Dushlaine C; Fromer M; Goldstein JI; Moran JL; Chambert K; Kähler A; Magnusson PK; Hultman CM; Sklar P; Purcell S; McCarroll SA; Sullivan PF
Mol Psychiatry; 2013 Nov; 18(11):1178-84. PubMed ID: 23938935
[TBL] [Abstract][Full Text] [Related]
16. Noise cancellation using total variation for copy number variation detection.
Zare F; Hosny A; Nabavi S
BMC Bioinformatics; 2018 Oct; 19(Suppl 11):361. PubMed ID: 30343665
[TBL] [Abstract][Full Text] [Related]
17. GenomeTornadoPlot: a novel R package for CNV visualization and focality analysis.
Hong C; Thiele R; Feuerbach L
Bioinformatics; 2022 Mar; 38(7):2036-2038. PubMed ID: 35099519
[TBL] [Abstract][Full Text] [Related]
18. Joint detection of germline and somatic copy number events in matched tumor-normal sample pairs.
Liu Y; Liu J; Wang Y
Bioinformatics; 2019 Dec; 35(23):4955-4961. PubMed ID: 31125057
[TBL] [Abstract][Full Text] [Related]
19. Integrating genomic correlation structure improves copy number variations detection.
Luo X; Qin F; Cai G; Xiao F
Bioinformatics; 2021 Apr; 37(3):312-317. PubMed ID: 32805016
[TBL] [Abstract][Full Text] [Related]
20. Refinement of computational identification of somatic copy number alterations using DNA methylation microarrays illustrated in cancers of unknown primary.
Blecua P; Davalos V; de Villasante I; Merkel A; Musulen E; Coll-SanMartin L; Esteller M
Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35524475
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
