BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 38252662)

  • 1. FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing.
    Chen HC; Wang J; Shyr Y; Liu Q
    PLoS Comput Biol; 2024 Jan; 20(1):e1011786. PubMed ID: 38252662
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
    Jiang H; Lei R; Ding SW; Zhu S
    BMC Bioinformatics; 2014 Jun; 15():182. PubMed ID: 24925680
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data.
    Tsuji J; Weng Z
    PLoS One; 2016; 11(10):e0164228. PubMed ID: 27736901
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-Throughput Identification of Adapters in Single-Read Sequencing Data.
    Mohideen AMSH; Johansen SD; Babiak I
    Biomolecules; 2020 Jun; 10(6):. PubMed ID: 32521604
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CleanTag Adapters Improve Small RNA Next-Generation Sequencing Library Preparation by Reducing Adapter Dimers.
    Shore S; Henderson JM; McCaffrey AP
    Methods Mol Biol; 2018; 1712():145-161. PubMed ID: 29224073
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm.
    Li YL; Weng JC; Hsiao CC; Chou MT; Tseng CW; Hung JH
    BMC Bioinformatics; 2015; 16 Suppl 1(Suppl 1):S2. PubMed ID: 25707528
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data.
    Sun K
    Bioinformatics; 2020 Jun; 36(11):3561-3562. PubMed ID: 32159761
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies.
    Kong Y
    Genomics; 2011 Aug; 98(2):152-3. PubMed ID: 21651976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Systematic comparison of small RNA library preparation protocols for next-generation sequencing.
    Dard-Dascot C; Naquin D; d'Aubenton-Carafa Y; Alix K; Thermes C; van Dijk E
    BMC Genomics; 2018 Feb; 19(1):118. PubMed ID: 29402217
    [TBL] [Abstract][Full Text] [Related]  

  • 10. HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly.
    Sim SB; Corpuz RL; Simmonds TJ; Geib SM
    BMC Genomics; 2022 Feb; 23(1):157. PubMed ID: 35193521
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accurate Adapter Information Is Crucial for Reproducibility and Reusability in Small RNA Seq Studies.
    Zhong X; Heinicke F; Lie BA; Rayner S
    Noncoding RNA; 2019 Oct; 5(4):. PubMed ID: 31661777
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural bias in T4 RNA ligase-mediated 3'-adapter ligation.
    Zhuang F; Fuchs RT; Sun Z; Zheng Y; Robb GB
    Nucleic Acids Res; 2012 Apr; 40(7):e54. PubMed ID: 22241775
    [TBL] [Abstract][Full Text] [Related]  

  • 13. AdapterRemoval v2: rapid adapter trimming, identification, and read merging.
    Schubert M; Lindgreen S; Orlando L
    BMC Res Notes; 2016 Feb; 9():88. PubMed ID: 26868221
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Multisite Evaluation of Next-Generation Methods for Small RNA Quantification.
    Herbert ZT; Thimmapuram J; Xie S; Kershner JP; Kolling FW; Ringelberg CS; LeClerc A; Alekseyev YO; Fan J; Podnar JW; Stevenson HS; Sommerville G; Gupta S; Berkeley M; Koeman J; Perera A; Scott AR; Grenier JK; Malik J; Ashton JM; Pivarski KL; Wang X; Kuffel G; Mesa TE; Smith AT; Shen J; Takata Y; Volkert TL; Love JA; Zhang Y; Wang J; Xuei X; Adams M; Levine SS
    J Biomol Tech; 2020 Jul; 31(2):47-56. PubMed ID: 31966025
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SeqPurge: highly-sensitive adapter trimming for paired-end NGS data.
    Sturm M; Schroeder C; Bauer P
    BMC Bioinformatics; 2016 May; 17():208. PubMed ID: 27161244
    [TBL] [Abstract][Full Text] [Related]  

  • 16. how_are_we_stranded_here: quick determination of RNA-Seq strandedness.
    Signal B; Kahlke T
    BMC Bioinformatics; 2022 Jan; 23(1):49. PubMed ID: 35065593
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FastqPuri: high-performance preprocessing of RNA-seq data.
    PĂ©rez-Rubio P; Lottaz C; Engelmann JC
    BMC Bioinformatics; 2019 May; 20(1):226. PubMed ID: 31053060
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Read trimming has minimal effect on bacterial SNP-calling accuracy.
    Bush SJ
    Microb Genom; 2020 Dec; 6(12):. PubMed ID: 33332257
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data.
    Zhou Q; Su X; Jing G; Chen S; Ning K
    BMC Genomics; 2018 Feb; 19(1):144. PubMed ID: 29444661
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Small RNA Profiling by Next-Generation Sequencing Using High-Definition Adapters.
    Billmeier M; Xu P
    Methods Mol Biol; 2017; 1580():45-57. PubMed ID: 28439825
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.