These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 38267717)

  • 1. Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments.
    Barcenilla C; Cobo-Díaz JF; De Filippis F; Valentino V; Cabrera Rubio R; O'Neil D; Mahler de Sanchez L; Armanini F; Carlino N; Blanco-Míguez A; Pinto F; Calvete-Torre I; Sabater C; Delgado S; Ruas-Madiedo P; Quijada NM; Dzieciol M; Skírnisdóttir S; Knobloch S; Puente A; López M; Prieto M; Marteinsson VT; Wagner M; Margolles A; Segata N; Cotter PD; Ercolini D; Alvarez-Ordóñez A
    Nat Protoc; 2024 May; 19(5):1291-1310. PubMed ID: 38267717
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparison Between Full-Length 16S rRNA Metabarcoding and Whole Metagenome Sequencing Suggests the Use of Either Is Suitable for Large-Scale Microbiome Studies.
    Rubiola S; Macori G; Civera T; Fanning S; Mitchell M; Chiesa F
    Foodborne Pathog Dis; 2022 Jul; 19(7):495-504. PubMed ID: 35819265
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
    Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces.
    Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
    BMC Genomics; 2021 May; 22(1):330. PubMed ID: 33957869
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Terabase-Scale Coassembly of a Tropical Soil Microbiome.
    Riley R; Bowers RM; Camargo AP; Campbell A; Egan R; Eloe-Fadrosh EA; Foster B; Hofmeyr S; Huntemann M; Kellom M; Kimbrel JA; Oliker L; Yelick K; Pett-Ridge J; Salamov A; Varghese NJ; Clum A
    Microbiol Spectr; 2023 Aug; 11(4):e0020023. PubMed ID: 37310219
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.
    Lim YW; Haynes M; Furlan M; Robertson CE; Harris JK; Rohwer F
    J Vis Exp; 2014 Dec; (94):. PubMed ID: 25549184
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics.
    Arikawa K; Ide K; Kogawa M; Saeki T; Yoda T; Endoh T; Matsuhashi A; Takeyama H; Hosokawa M
    Microbiome; 2021 Oct; 9(1):202. PubMed ID: 34641955
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction.
    Simon SA; Schmidt K; Griesdorn L; Soares AR; Bornemann TLV; Probst AJ
    BMC Genomics; 2023 Dec; 24(1):727. PubMed ID: 38041056
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation.
    Cuscó A; Pérez D; Viñes J; Fàbregas N; Francino O
    Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35298370
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sequencing-based analysis of the microbiomes of Spanish food processing facilities reveals environment-specific variation in the dominant taxa and antibiotic resistance genes.
    Alvarez-Molina A; Cobo-Díaz JF; Alexa EA; Crispie F; Prieto M; López M; Cotter PD; Alvarez-Ordóñez A
    Food Res Int; 2023 Nov; 173(Pt 2):113442. PubMed ID: 37803768
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes.
    Kim CY; Lee M; Yang S; Kim K; Yong D; Kim HR; Lee I
    Genome Med; 2021 Aug; 13(1):134. PubMed ID: 34446072
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.
    Lee STM; Kahn SA; Delmont TO; Shaiber A; Esen ÖC; Hubert NA; Morrison HG; Antonopoulos DA; Rubin DT; Eren AM
    Microbiome; 2017 May; 5(1):50. PubMed ID: 28473000
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists.
    Jo J; Oh J; Park C
    J Microbiol; 2020 Mar; 58(3):176-192. PubMed ID: 32108314
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
    Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
    BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Metagenome-Assembled Genomes Contribute to Unraveling of the Microbiome of Cocoa Fermentation.
    Almeida OGG; De Martinis ECP
    Appl Environ Microbiol; 2021 Jul; 87(16):e0058421. PubMed ID: 34105982
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Metagenomic insights into the dynamics of microbial communities in food.
    Kergourlay G; Taminiau B; Daube G; Champomier Vergès MC
    Int J Food Microbiol; 2015 Nov; 213():31-9. PubMed ID: 26414193
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method.
    Maranga M; Szczerbiak P; Bezshapkin V; Gligorijevic V; Chandler C; Bonneau R; Xavier RJ; Vatanen T; Kosciolek T
    mSystems; 2023 Apr; 8(2):e0117822. PubMed ID: 37010293
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Freshwater monitoring by nanopore sequencing.
    Urban L; Holzer A; Baronas JJ; Hall MB; Braeuninger-Weimer P; Scherm MJ; Kunz DJ; Perera SN; Martin-Herranz DE; Tipper ET; Salter SJ; Stammnitz MR
    Elife; 2021 Jan; 10():. PubMed ID: 33461660
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Psychrotrophic Bacteria Equipped with Virulence and Colonization Traits Populate the Ice Cream Manufacturing Environment.
    Valentino V; De Filippis F; Sequino G; Ercolini D
    Appl Environ Microbiol; 2023 Aug; 89(8):e0076523. PubMed ID: 37432121
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.