These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

123 related articles for article (PubMed ID: 38314776)

  • 1. MetaLo: metabolic analysis of Logical models extracted from molecular interaction maps.
    Aghakhani S; Niarakis A; Soliman S
    J Integr Bioinform; 2024 Feb; ():. PubMed ID: 38314776
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automated inference of Boolean models from molecular interaction maps using CaSQ.
    Aghamiri SS; Singh V; Naldi A; Helikar T; Soliman S; Niarakis A
    Bioinformatics; 2020 Aug; 36(16):4473-4482. PubMed ID: 32403123
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Stochastic Boolean networks: an efficient approach to modeling gene regulatory networks.
    Liang J; Han J
    BMC Syst Biol; 2012 Aug; 6():113. PubMed ID: 22929591
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Advanced Modeling of Cellular Proliferation: Toward a Multi-scale Framework Coupling Cell Cycle to Metabolism by Integrating Logical and Constraint-Based Models.
    van der Zee L; Barberis M
    Methods Mol Biol; 2019; 2049():365-385. PubMed ID: 31602622
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CANA: A Python Package for Quantifying Control and Canalization in Boolean Networks.
    Correia RB; Gates AJ; Wang X; Rocha LM
    Front Physiol; 2018; 9():1046. PubMed ID: 30154728
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer.
    Sompairac N; Modamio J; Barillot E; Fleming RMT; Zinovyev A; Kuperstein I
    BMC Bioinformatics; 2019 Apr; 20(Suppl 4):140. PubMed ID: 30999838
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.
    Medlock GL; Moutinho TJ; Papin JA
    PLoS Comput Biol; 2020 Apr; 16(4):e1007847. PubMed ID: 32348298
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R; Singhal M
    Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Coupling Fluxes, Enzymes, and Regulation in Genome-Scale Metabolic Models.
    Jensen PA
    Methods Mol Biol; 2018; 1716():337-351. PubMed ID: 29222761
    [TBL] [Abstract][Full Text] [Related]  

  • 10. EpiLog: A software for the logical modelling of epithelial dynamics.
    Varela PL; Ramos CV; Monteiro PT; Chaouiya C
    F1000Res; 2018; 7():1145. PubMed ID: 30363398
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Constraint-Based Reconstruction and Analyses of Metabolic Models: Open-Source Python Tools and Applications to Cancer.
    Ng RH; Lee JW; Baloni P; Diener C; Heath JR; Su Y
    Front Oncol; 2022; 12():914594. PubMed ID: 35875150
    [TBL] [Abstract][Full Text] [Related]  

  • 12. APPINetwork: an R package for building and computational analysis of protein-protein interaction networks.
    Gosset S; Glatigny A; Gallopin M; Yi Z; Salé M; Mucchielli-Giorgi MH
    PeerJ; 2022; 10():e14204. PubMed ID: 36353604
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Boolean function metrics can assist modelers to check and choose logical rules.
    Zobolas J; Monteiro PT; Kuiper M; Flobak Å
    J Theor Biol; 2022 Apr; 538():111025. PubMed ID: 35085537
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FlexFlux: combining metabolic flux and regulatory network analyses.
    Marmiesse L; Peyraud R; Cottret L
    BMC Syst Biol; 2015 Dec; 9():93. PubMed ID: 26666757
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Visual setup of logical models of signaling and regulatory networks with ProMoT.
    Saez-Rodriguez J; Mirschel S; Hemenway R; Klamt S; Gilles ED; Ginkel M
    BMC Bioinformatics; 2006 Nov; 7():506. PubMed ID: 17109765
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BioLQM: A Java Toolkit for the Manipulation and Conversion of Logical Qualitative Models of Biological Networks.
    Naldi A
    Front Physiol; 2018; 9():1605. PubMed ID: 30510517
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networks.
    Samaga R; Klamt S
    Cell Commun Signal; 2013 Jun; 11(1):43. PubMed ID: 23803171
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Trap spaces of multi-valued networks: definition, computation, and applications.
    Trinh VG; Benhamou B; Henzinger T; Pastva S
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i513-i522. PubMed ID: 37387165
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A graphical and computational modeling platform for biological pathways.
    Livigni A; O'Hara L; Polak ME; Angus T; Wright DW; Smith LB; Freeman TC
    Nat Protoc; 2018 Apr; 13(4):705-722. PubMed ID: 29543794
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PyIOmica: longitudinal omics analysis and trend identification.
    Domanskyi S; Piermarocchi C; Mias GI
    Bioinformatics; 2020 Apr; 36(7):2306-2307. PubMed ID: 31778155
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.