These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
231 related articles for article (PubMed ID: 38315121)
1. Detecting horizontal gene transfer with metagenomics co-barcoding sequencing. Han K; Li J; Yang D; Zhuang Q; Zeng H; Rong C; Yue J; Li N; Gu C; Chen L; Chen C Microbiol Spectr; 2024 Mar; 12(3):e0360223. PubMed ID: 38315121 [TBL] [Abstract][Full Text] [Related]
2. Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation. Seiler E; Trappe K; Renard BY PLoS Comput Biol; 2019 Jul; 15(7):e1007208. PubMed ID: 31335917 [TBL] [Abstract][Full Text] [Related]
3. MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches. Song W; Wemheuer B; Zhang S; Steensen K; Thomas T Microbiome; 2019 Mar; 7(1):36. PubMed ID: 30832740 [TBL] [Abstract][Full Text] [Related]
4. Horizontal gene transfer in an acid mine drainage microbial community. Guo J; Wang Q; Wang X; Wang F; Yao J; Zhu H BMC Genomics; 2015 Jul; 16(1):496. PubMed ID: 26141154 [TBL] [Abstract][Full Text] [Related]
5. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach. Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976 [TBL] [Abstract][Full Text] [Related]
6. Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes. Slizovskiy IB; Oliva M; Settle JK; Zyskina LV; Prosperi M; Boucher C; Noyes NR Microbiome; 2022 Nov; 10(1):185. PubMed ID: 36324140 [TBL] [Abstract][Full Text] [Related]
7. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools. Rotimi AM; Pierneef R; Reva ON BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813 [TBL] [Abstract][Full Text] [Related]
8. Bioinformatic Pipeline for Profiling Foodborne Bacterial Ecology and Resistome from Short-Read Metagenomics. Lemée P; Bridier A Methods Mol Biol; 2025; 2852():289-309. PubMed ID: 39235751 [TBL] [Abstract][Full Text] [Related]
9. A comprehensive investigation of metagenome assembly by linked-read sequencing. Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883 [TBL] [Abstract][Full Text] [Related]
10. Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes. Douglas GM; Langille MGI Genome Biol Evol; 2019 Oct; 11(10):2750-2766. PubMed ID: 31504488 [TBL] [Abstract][Full Text] [Related]
11. Slightly beneficial genes are retained by bacteria evolving DNA uptake despite selfish elements. van Dijk B; Hogeweg P; Doekes HM; Takeuchi N Elife; 2020 May; 9():. PubMed ID: 32432548 [TBL] [Abstract][Full Text] [Related]
18. Exploring high-quality microbial genomes by assembling short-reads with long-range connectivity. Zhang Z; Xiao J; Wang H; Yang C; Huang Y; Yue Z; Chen Y; Han L; Yin K; Lyu A; Fang X; Zhang L Nat Commun; 2024 May; 15(1):4631. PubMed ID: 38821971 [TBL] [Abstract][Full Text] [Related]
19. NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes. Arango-Argoty GA; Dai D; Pruden A; Vikesland P; Heath LS; Zhang L Microbiome; 2019 Jun; 7(1):88. PubMed ID: 31174603 [TBL] [Abstract][Full Text] [Related]
20. Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN. Bağcı C; Beier S; Górska A; Huson DH Methods Mol Biol; 2019; 1910():591-604. PubMed ID: 31278678 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]