134 related articles for article (PubMed ID: 38315776)
1. The Web-Based Portal SpatialTME Integrates Histological Images with Single-Cell and Spatial Transcriptomics to Explore the Tumor Microenvironment.
Shi J; Wei X; Xun Z; Ding X; Liu Y; Liu L; Ye Y
Cancer Res; 2024 Apr; 84(8):1210-1220. PubMed ID: 38315776
[TBL] [Abstract][Full Text] [Related]
2. Integration of Pan-Cancer Single-Cell and Spatial Transcriptomics Reveals Stromal Cell Features and Therapeutic Targets in Tumor Microenvironment.
Du Y; Shi J; Wang J; Xun Z; Yu Z; Sun H; Bao R; Zheng J; Li Z; Ye Y
Cancer Res; 2024 Jan; 84(2):192-210. PubMed ID: 38225927
[TBL] [Abstract][Full Text] [Related]
3. Reconstruction of the tumor spatial microenvironment along the malignant-boundary-nonmalignant axis.
Xun Z; Ding X; Zhang Y; Zhang B; Lai S; Zou D; Zheng J; Chen G; Su B; Han L; Ye Y
Nat Commun; 2023 Feb; 14(1):933. PubMed ID: 36806082
[TBL] [Abstract][Full Text] [Related]
4. Deciphering tumor ecosystems at super resolution from spatial transcriptomics with TESLA.
Hu J; Coleman K; Zhang D; Lee EB; Kadara H; Wang L; Li M
Cell Syst; 2023 May; 14(5):404-417.e4. PubMed ID: 37164011
[TBL] [Abstract][Full Text] [Related]
5. Computational solutions for spatial transcriptomics.
Kleino I; FrolovaitÄ— P; Suomi T; Elo LL
Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
[TBL] [Abstract][Full Text] [Related]
6. Deciphering the Immune Microenvironment at the Forefront of Tumor Aggressiveness by Constructing a Regulatory Network with Single-Cell and Spatial Transcriptomic Data.
Xu K; Yu D; Zhang S; Chen L; Liu Z; Xie L
Genes (Basel); 2024 Jan; 15(1):. PubMed ID: 38254989
[TBL] [Abstract][Full Text] [Related]
7. Spatial transcriptomics atlas reveals the crosstalk between cancer-associated fibroblasts and tumor microenvironment components in colorectal cancer.
Peng Z; Ye M; Ding H; Feng Z; Hu K
J Transl Med; 2022 Jul; 20(1):302. PubMed ID: 35794563
[TBL] [Abstract][Full Text] [Related]
8. TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment.
Sun D; Wang J; Han Y; Dong X; Ge J; Zheng R; Shi X; Wang B; Li Z; Ren P; Sun L; Yan Y; Zhang P; Zhang F; Li T; Wang C
Nucleic Acids Res; 2021 Jan; 49(D1):D1420-D1430. PubMed ID: 33179754
[TBL] [Abstract][Full Text] [Related]
9. Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces.
Deshpande A; Loth M; Sidiropoulos DN; Zhang S; Yuan L; Bell ATF; Zhu Q; Ho WJ; Santa-Maria C; Gilkes DM; Williams SR; Uytingco CR; Chew J; Hartnett A; Bent ZW; Favorov AV; Popel AS; Yarchoan M; Kiemen A; Wu PH; Fujikura K; Wirtz D; Wood LD; Zheng L; Jaffee EM; Anders RA; Danilova L; Stein-O'Brien G; Kagohara LT; Fertig EJ
Cell Syst; 2023 Apr; 14(4):285-301.e4. PubMed ID: 37080163
[TBL] [Abstract][Full Text] [Related]
10. Integrating microarray-based spatial transcriptomics and single-cell RNA-sequencing reveals tissue architecture in esophageal squamous cell carcinoma.
Guo W; Zhou B; Yang Z; Liu X; Huai Q; Guo L; Xue X; Tan F; Li Y; Xue Q; Gao S; He J
EBioMedicine; 2022 Oct; 84():104281. PubMed ID: 36162205
[TBL] [Abstract][Full Text] [Related]
11. Inference on spatial heterogeneity in tumor microenvironment using spatial transcriptomics data.
Biswas A; Ghaddar B; Riedlinger G; De S
Comput Syst Oncol; 2022 Sep; 2(3):. PubMed ID: 36035873
[TBL] [Abstract][Full Text] [Related]
12. Harnessing TME depicted by histological images to improve cancer prognosis through a deep learning system.
Gao R; Yuan X; Ma Y; Wei T; Johnston L; Shao Y; Lv W; Zhu T; Zhang Y; Zheng J; Chen G; Sun J; Wang YG; Yu Z
Cell Rep Med; 2024 May; 5(5):101536. PubMed ID: 38697103
[TBL] [Abstract][Full Text] [Related]
13. Screening TCGA database for prognostic genes in lower grade glioma microenvironment.
Ni J; Liu S; Qi F; Li X; Yu S; Feng J; Zheng Y
Ann Transl Med; 2020 Mar; 8(5):209. PubMed ID: 32309356
[TBL] [Abstract][Full Text] [Related]
14. Delineating spatial cell-cell interactions in the solid tumour microenvironment through the lens of highly multiplexed imaging.
Cohn DE; Forder A; Marshall EA; Vucic EA; Stewart GL; Noureddine K; Lockwood WW; MacAulay CE; Guillaud M; Lam WL
Front Immunol; 2023; 14():1275890. PubMed ID: 37936700
[TBL] [Abstract][Full Text] [Related]
15. Computational cell-cell interaction technologies drive mechanistic and biomarker discovery in the tumor microenvironment.
Pong A; Mah CK; Yeo GW; Lewis NE
Curr Opin Biotechnol; 2024 Feb; 85():103048. PubMed ID: 38142648
[TBL] [Abstract][Full Text] [Related]
16. STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization.
Xu Z; Wang W; Yang T; Li L; Ma X; Chen J; Wang J; Huang Y; Gould J; Lu H; Du W; Sahu SK; Yang F; Li Z; Hu Q; Hua C; Hu S; Liu Y; Cai J; You L; Zhang Y; Li Y; Zeng W; Chen A; Wang B; Liu L; Chen F; Ma K; Xu X; Wei X
Nucleic Acids Res; 2024 Jan; 52(D1):D1053-D1061. PubMed ID: 37953328
[TBL] [Abstract][Full Text] [Related]
17. Identification of cuproptosis-related subtypes, construction of a prognosis model, and tumor microenvironment landscape in gastric cancer.
Wang J; Qin D; Tao Z; Wang B; Xie Y; Wang Y; Li B; Cao J; Qiao X; Zhong S; Hu X
Front Immunol; 2022; 13():1056932. PubMed ID: 36479114
[TBL] [Abstract][Full Text] [Related]
18. Integration of single-nuclei RNA-sequencing, spatial transcriptomics and histochemistry defines the complex microenvironment of NF1-associated plexiform neurofibromas.
Amani V; Riemondy KA; Fu R; Griesinger AM; Grimaldo E; De Sousa GR; Gilani A; Hemenway M; Foreman NK; Donson AM; Willard N
Acta Neuropathol Commun; 2023 Sep; 11(1):158. PubMed ID: 37770931
[TBL] [Abstract][Full Text] [Related]
19. Prognostic value of tumour microenvironment-related genes by TCGA database in rectal cancer.
Li C; Liu T; Liu Y; Zhang J; Zuo D
J Cell Mol Med; 2021 Jun; 25(12):5811-5822. PubMed ID: 33949771
[TBL] [Abstract][Full Text] [Related]
20. Applications of Single-Cell Omics to Dissect Tumor Microenvironment.
Guo T; Li W; Cai X
Front Genet; 2020; 11():548719. PubMed ID: 33329692
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]