These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 38321522)

  • 1. Global exact optimisations for chloroplast structural haplotype scaffolding.
    Epain V; Andonov R
    Algorithms Mol Biol; 2024 Feb; 19(1):5. PubMed ID: 38321522
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.
    Wang W; Schalamun M; Morales-Suarez A; Kainer D; Schwessinger B; Lanfear R
    BMC Genomics; 2018 Dec; 19(1):977. PubMed ID: 30594129
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An Integer Linear Programming Approach for Scaffolding Based on Exemplar Breakpoint Distance.
    Shieh YK; Peng DY; Chen YH; Wu TW; Lu CL
    J Comput Biol; 2022 Sep; 29(9):961-973. PubMed ID: 35638936
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Complete assembly of circular and chloroplast genomes based on global optimization.
    Andonov R; Djidjev H; François S; Lavenier D
    J Bioinform Comput Biol; 2019 Jun; 17(3):1950014. PubMed ID: 31288643
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data.
    Soorni A; Haak D; Zaitlin D; Bombarely A
    BMC Genomics; 2017 Jan; 18(1):49. PubMed ID: 28061749
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SLR: a scaffolding algorithm based on long reads and contig classification.
    Luo J; Lyu M; Chen R; Zhang X; Luo H; Yan C
    BMC Bioinformatics; 2019 Oct; 20(1):539. PubMed ID: 31666010
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromosome structures: reduction of certain problems with unequal gene content and gene paralogs to integer linear programming.
    Lyubetsky V; Gershgorin R; Gorbunov K
    BMC Bioinformatics; 2017 Dec; 18(1):537. PubMed ID: 29212445
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ILP-based maximum likelihood genome scaffolding.
    Lindsay J; Salooti H; Măndoiu I; Zelikovsky A
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S9. PubMed ID: 25253180
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Chloroplast Genome Annotation Tools: Prolegomena to the Identification of Inverted Repeats.
    Turudić A; Liber Z; Grdiša M; Jakše J; Varga F; Šatović Z
    Int J Mol Sci; 2022 Sep; 23(18):. PubMed ID: 36142721
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations.
    Karamitros T; van Wilgenburg B; Wills M; Klenerman P; Magiorkinis G
    BMC Genomics; 2018 Aug; 19(1):577. PubMed ID: 30068288
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SOPRA: Scaffolding algorithm for paired reads via statistical optimization.
    Dayarian A; Michael TP; Sengupta AM
    BMC Bioinformatics; 2010 Jun; 11():345. PubMed ID: 20576136
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome.
    Nazareno AG; Carlsen M; Lohmann LG
    PLoS One; 2015; 10(6):e0129930. PubMed ID: 26103589
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences.
    Gao S; Sung WK; Nagarajan N
    J Comput Biol; 2011 Nov; 18(11):1681-91. PubMed ID: 21929371
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Complete chloroplast genome of Macadamia integrifolia confirms the position of the Gondwanan early-diverging eudicot family Proteaceae.
    Nock CJ; Baten A; King GJ
    BMC Genomics; 2014; 15 Suppl 9(Suppl 9):S13. PubMed ID: 25522147
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Exact algorithms for haplotype assembly from whole-genome sequence data.
    Chen ZZ; Deng F; Wang L
    Bioinformatics; 2013 Aug; 29(16):1938-45. PubMed ID: 23782612
    [TBL] [Abstract][Full Text] [Related]  

  • 16.
    Izan S; Esselink D; Visser RGF; Smulders MJM; Borm T
    Front Plant Sci; 2017; 8():1271. PubMed ID: 28824658
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparative and phylogenetic analysis of the complete chloroplast genomes of 10 Artemisia selengensis resources based on high-throughput sequencing.
    Wang Y; Wei Q; Xue T; He S; Fang J; Zeng C
    BMC Genomics; 2024 Jun; 25(1):561. PubMed ID: 38840044
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multi-CAR: a tool of contig scaffolding using multiple references.
    Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
    [TBL] [Abstract][Full Text] [Related]  

  • 19. LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.
    Warren RL; Yang C; Vandervalk BP; Behsaz B; Lagman A; Jones SJ; Birol I
    Gigascience; 2015; 4():35. PubMed ID: 26244089
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Chloroplast genomes of four
    Xu S; Teng K; Zhang H; Gao K; Wu J; Duan L; Yue Y; Fan X
    Front Plant Sci; 2023; 14():1100876. PubMed ID: 36778700
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.