201 related articles for article (PubMed ID: 38351241)
1. Technical optimization of spatially resolved single-cell transcriptomic datasets to study clinical liver disease.
Rocque B; Guion K; Singh P; Bangerth S; Pickard L; Bhattacharjee J; Eguizabal S; Weaver C; Chopra S; Zhou S; Kohli R; Sher L; Akbari O; Ekser B; Emamaullee JA
Sci Rep; 2024 Feb; 14(1):3612. PubMed ID: 38351241
[TBL] [Abstract][Full Text] [Related]
2. Technical optimization of spatially resolved single-cell transcriptomic datasets to study clinical liver disease.
Rocque B; Guion K; Singh P; Bangerth S; Pickard L; Bhattacharjee J; Eguizabal S; Weaver C; Chopra S; Zhou S; Kohli R; Sher L; Ekser B; Emamaullee JA
Res Sq; 2023 Sep; ():. PubMed ID: 37720049
[TBL] [Abstract][Full Text] [Related]
3. Single-cell and spatial transcriptomics reveal the fibrosis-related immune landscape of biliary atresia.
Ye C; Zhu J; Wang J; Chen D; Meng L; Zhan Y; Yang R; He S; Li Z; Dai S; Li Y; Sun S; Shen Z; Huang Y; Dong R; Chen G; Zheng S
Clin Transl Med; 2022 Nov; 12(11):e1070. PubMed ID: 36333281
[TBL] [Abstract][Full Text] [Related]
4. Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk.
Shao X; Li C; Yang H; Lu X; Liao J; Qian J; Wang K; Cheng J; Yang P; Chen H; Xu X; Fan X
Nat Commun; 2022 Jul; 13(1):4429. PubMed ID: 35908020
[TBL] [Abstract][Full Text] [Related]
5. Computational solutions for spatial transcriptomics.
Kleino I; Frolovaitė P; Suomi T; Elo LL
Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
[TBL] [Abstract][Full Text] [Related]
6. Spatial transcriptomics using multiplexed deterministic barcoding in tissue.
Wirth J; Huber N; Yin K; Brood S; Chang S; Martinez-Jimenez CP; Meier M
Nat Commun; 2023 Mar; 14(1):1523. PubMed ID: 36934108
[TBL] [Abstract][Full Text] [Related]
7. Spatially informed cell-type deconvolution for spatial transcriptomics.
Ma Y; Zhou X
Nat Biotechnol; 2022 Sep; 40(9):1349-1359. PubMed ID: 35501392
[TBL] [Abstract][Full Text] [Related]
8. Spatial transcriptomics identifies enriched gene expression and cell types in human liver fibrosis.
Chung BK; Øgaard J; Reims HM; Karlsen TH; Melum E
Hepatol Commun; 2022 Sep; 6(9):2538-2550. PubMed ID: 35726350
[TBL] [Abstract][Full Text] [Related]
9. Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration.
McKellar DW; Walter LD; Song LT; Mantri M; Wang MFZ; De Vlaminck I; Cosgrove BD
Commun Biol; 2021 Nov; 4(1):1280. PubMed ID: 34773081
[TBL] [Abstract][Full Text] [Related]
10. Single-cell genomics and spatial transcriptomics: Discovery of novel cell states and cellular interactions in liver physiology and disease biology.
Saviano A; Henderson NC; Baumert TF
J Hepatol; 2020 Nov; 73(5):1219-1230. PubMed ID: 32534107
[TBL] [Abstract][Full Text] [Related]
11. Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST.
Liu W; Liao X; Luo Z; Yang Y; Lau MC; Jiao Y; Shi X; Zhai W; Ji H; Yeong J; Liu J
Nat Commun; 2023 Jan; 14(1):296. PubMed ID: 36653349
[TBL] [Abstract][Full Text] [Related]
12. Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities.
Miller BF; Bambah-Mukku D; Dulac C; Zhuang X; Fan J
Genome Res; 2021 Oct; 31(10):1843-1855. PubMed ID: 34035045
[TBL] [Abstract][Full Text] [Related]
13. Single-cell level deconvolution, convolution, and clustering in spatial transcriptomics by aligning spot level transcriptome to nuclear morphology.
Zhu S; Kubota N; Wang S; Wang T; Xiao G; Hoshida Y
bioRxiv; 2023 Dec; ():. PubMed ID: 38187541
[TBL] [Abstract][Full Text] [Related]
14. Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data.
Miller BF; Huang F; Atta L; Sahoo A; Fan J
Nat Commun; 2022 Apr; 13(1):2339. PubMed ID: 35487922
[TBL] [Abstract][Full Text] [Related]
15. Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding.
Shen R; Liu L; Wu Z; Zhang Y; Yuan Z; Guo J; Yang F; Zhang C; Chen B; Feng W; Liu C; Guo J; Fan G; Zhang Y; Li Y; Xu X; Yao J
Nat Commun; 2022 Dec; 13(1):7640. PubMed ID: 36496406
[TBL] [Abstract][Full Text] [Related]
16. Single-cell technologies in hepatology: new insights into liver biology and disease pathogenesis.
Ramachandran P; Matchett KP; Dobie R; Wilson-Kanamori JR; Henderson NC
Nat Rev Gastroenterol Hepatol; 2020 Aug; 17(8):457-472. PubMed ID: 32483353
[TBL] [Abstract][Full Text] [Related]
17. STellaris: a web server for accurate spatial mapping of single cells based on spatial transcriptomics data.
Li X; Xiao C; Qi J; Xue W; Xu X; Mu Z; Zhang J; Li CY; Ding W
Nucleic Acids Res; 2023 Jul; 51(W1):W560-W568. PubMed ID: 37224539
[TBL] [Abstract][Full Text] [Related]
18. Novel insights from spatial transcriptome analysis in solid tumors.
Du J; An ZJ; Huang ZF; Yang YC; Zhang MH; Fu XH; Shi WY; Hou J
Int J Biol Sci; 2023; 19(15):4778-4792. PubMed ID: 37781515
[TBL] [Abstract][Full Text] [Related]
19. MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance.
Niyakan S; Sheng J; Cao Y; Zhang X; Xu Z; Wu L; Wong STC; Qian X
Patterns (N Y); 2024 May; 5(5):100986. PubMed ID: 38800365
[TBL] [Abstract][Full Text] [Related]
20. Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data.
Shan X; Chen J; Dong K; Zhou W; Zhang S
J Comput Biol; 2022 Jul; 29(7):650-663. PubMed ID: 35727094
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
