These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

132 related articles for article (PubMed ID: 38361606)

  • 21. Measuring functional similarity of lncRNAs based on variable K-mer profiles of nucleotide sequences.
    Teng Z; Shi L; Yu H; Wu C; Tian Z
    Methods; 2023 Apr; 212():21-30. PubMed ID: 36813016
    [TBL] [Abstract][Full Text] [Related]  

  • 22. PanKmer: k-mer-based and reference-free pangenome analysis.
    Aylward AJ; Petrus S; Mamerto A; Hartwick NT; Michael TP
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37846049
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples.
    Pettengill JB; Pightling AW; Baugher JD; Rand H; Strain E
    PLoS One; 2016; 11(11):e0166162. PubMed ID: 27832109
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 25. CMash: fast, multi-resolution estimation of k-mer-based Jaccard and containment indices.
    Liu S; Koslicki D
    Bioinformatics; 2022 Jun; 38(Suppl 1):i28-i35. PubMed ID: 35758788
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 27. K-Mer-Based Genome Size Estimation in Theory and Practice.
    Hesse U
    Methods Mol Biol; 2023; 2672():79-113. PubMed ID: 37335470
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Fast computation of the eigensystem of genomic similarity matrices.
    Hahn G; Lutz SM; Hecker J; Prokopenko D; Cho MH; Silverman EK; Weiss ST; Lange C
    BMC Bioinformatics; 2024 Jan; 25(1):43. PubMed ID: 38273228
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data.
    Chung NC; Miasojedow B; Startek M; Gambin A
    BMC Bioinformatics; 2019 Dec; 20(Suppl 15):644. PubMed ID: 31874610
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach.
    Melicher D; Torson AS; Dworkin I; Bowsher JH
    BMC Genomics; 2014 Mar; 15(1):188. PubMed ID: 24621177
    [TBL] [Abstract][Full Text] [Related]  

  • 31. ntCard: a streaming algorithm for cardinality estimation in genomics data.
    Mohamadi H; Khan H; Birol I
    Bioinformatics; 2017 May; 33(9):1324-1330. PubMed ID: 28453674
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.
    Lau BT; Pavlichin D; Hooker AC; Almeda A; Shin G; Chen J; Sahoo MK; Huang CH; Pinsky BA; Lee HJ; Ji HP
    Genome Med; 2021 Apr; 13(1):62. PubMed ID: 33875001
    [TBL] [Abstract][Full Text] [Related]  

  • 33. SAKE: Strobemer-assisted k-mer extraction.
    Leinonen M; Salmela L
    PLoS One; 2023; 18(11):e0294415. PubMed ID: 38019768
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.
    Lau BT; Pavlichin D; Hooker AC; Almeda A; Shin G; Chen J; Sahoo MK; Huang C; Pinsky BA; Lee H; Ji HP
    medRxiv; 2020 Nov; ():. PubMed ID: 33173909
    [TBL] [Abstract][Full Text] [Related]  

  • 35. K-mer-Based Motif Analysis in Insect Species across
    Cserhati M; Xiao P; Guda C
    Comput Math Methods Med; 2019; 2019():4259479. PubMed ID: 31827584
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Rooibos (
    Mgwatyu Y; Stander AA; Ferreira S; Williams W; Hesse U
    Plants (Basel); 2020 Feb; 9(2):. PubMed ID: 32085566
    [TBL] [Abstract][Full Text] [Related]  

  • 37. JASPER: A fast genome polishing tool that improves accuracy of genome assemblies.
    Guo A; Salzberg SL; Zimin AV
    PLoS Comput Biol; 2023 Mar; 19(3):e1011032. PubMed ID: 37000853
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Segmented K-mer and its application on similarity analysis of mitochondrial genome sequences.
    Yu HJ
    Gene; 2013 Apr; 518(2):419-24. PubMed ID: 23353775
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Streaming histogram sketching for rapid microbiome analytics.
    Rowe WP; Carrieri AP; Alcon-Giner C; Caim S; Shaw A; Sim K; Kroll JS; Hall LJ; Pyzer-Knapp EO; Winn MD
    Microbiome; 2019 Mar; 7(1):40. PubMed ID: 30878035
    [TBL] [Abstract][Full Text] [Related]  

  • 40. GMASS: a novel measure for genome assembly structural similarity.
    Kwon D; Lee J; Kim J
    BMC Bioinformatics; 2019 Mar; 20(1):147. PubMed ID: 30885117
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.