114 related articles for article (PubMed ID: 38364008)
21. Accurate analytic solution of chemical master equations for gene regulation networks in a single cell.
Huang GR; Saakian DB; Hu CK
Phys Rev E; 2018 Jan; 97(1-1):012412. PubMed ID: 29448337
[TBL] [Abstract][Full Text] [Related]
22. Method of conditional moments (MCM) for the Chemical Master Equation: a unified framework for the method of moments and hybrid stochastic-deterministic models.
Hasenauer J; Wolf V; Kazeroonian A; Theis FJ
J Math Biol; 2014 Sep; 69(3):687-735. PubMed ID: 23918091
[TBL] [Abstract][Full Text] [Related]
23. Noise suppression in stochastic genetic circuits using PID controllers.
Modi S; Dey S; Singh A
PLoS Comput Biol; 2021 Jul; 17(7):e1009249. PubMed ID: 34319990
[TBL] [Abstract][Full Text] [Related]
24. Special function methods for bursty models of transcription.
Gorin G; Pachter L
Phys Rev E; 2020 Aug; 102(2-1):022409. PubMed ID: 32942485
[TBL] [Abstract][Full Text] [Related]
25. Solving the chemical master equation for monomolecular reaction systems analytically.
Jahnke T; Huisinga W
J Math Biol; 2007 Jan; 54(1):1-26. PubMed ID: 16953443
[TBL] [Abstract][Full Text] [Related]
26. Exact solution of stochastic gene expression models with bursting, cell cycle and replication dynamics.
Beentjes CHL; Perez-Carrasco R; Grima R
Phys Rev E; 2020 Mar; 101(3-1):032403. PubMed ID: 32290003
[TBL] [Abstract][Full Text] [Related]
27. Bounding the stationary distributions of the chemical master equation via mathematical programming.
Kuntz J; Thomas P; Stan GB; Barahona M
J Chem Phys; 2019 Jul; 151(3):034109. PubMed ID: 31325941
[TBL] [Abstract][Full Text] [Related]
28. Novel domain expansion methods to improve the computational efficiency of the Chemical Master Equation solution for large biological networks.
Kosarwal R; Kulasiri D; Samarasinghe S
BMC Bioinformatics; 2020 Nov; 21(1):515. PubMed ID: 33176690
[TBL] [Abstract][Full Text] [Related]
29. A Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-Networks.
Albert J
PLoS One; 2016; 11(3):e0149909. PubMed ID: 26930199
[TBL] [Abstract][Full Text] [Related]
30. Modulation of nuclear and cytoplasmic mRNA fluctuations by time-dependent stimuli: Analytical distributions.
Filatova T; Popović N; Grima R
Math Biosci; 2022 May; 347():108828. PubMed ID: 35461835
[TBL] [Abstract][Full Text] [Related]
31. Revisiting the Reduction of Stochastic Models of Genetic Feedback Loops with Fast Promoter Switching.
Holehouse J; Grima R
Biophys J; 2019 Oct; 117(7):1311-1330. PubMed ID: 31540707
[TBL] [Abstract][Full Text] [Related]
32. Numerical solution of the chemical master equation uniqueness and stability of the stationary distribution for chemical networks, and mRNA bursting in a gene network with negative feedback regulation.
Zeron ES; Santillán M
Methods Enzymol; 2011; 487():147-69. PubMed ID: 21187225
[TBL] [Abstract][Full Text] [Related]
33. A finite state projection algorithm for the stationary solution of the chemical master equation.
Gupta A; Mikelson J; Khammash M
J Chem Phys; 2017 Oct; 147(15):154101. PubMed ID: 29055349
[TBL] [Abstract][Full Text] [Related]
34. Transient analysis of stochastic switches and trajectories with applications to gene regulatory networks.
Munsky B; Khammash M
IET Syst Biol; 2008 Sep; 2(5):323-33. PubMed ID: 19045827
[TBL] [Abstract][Full Text] [Related]
35. Inferring single-cell gene expression mechanisms using stochastic simulation.
Daigle BJ; Soltani M; Petzold LR; Singh A
Bioinformatics; 2015 May; 31(9):1428-35. PubMed ID: 25573914
[TBL] [Abstract][Full Text] [Related]
36. Analysis of stochastic strategies in bacterial competence: a master equation approach.
Dandach SH; Khammash M
PLoS Comput Biol; 2010 Nov; 6(11):e1000985. PubMed ID: 21085679
[TBL] [Abstract][Full Text] [Related]
37. Quantifying and correcting bias in transcriptional parameter inference from single-cell data.
Grima R; Esmenjaud PM
Biophys J; 2024 Jan; 123(1):4-30. PubMed ID: 37885177
[TBL] [Abstract][Full Text] [Related]
38. Estimation of mean first passage time for bursty gene expression.
Shreshtha M; Surendran A; Ghosh A
Phys Biol; 2016 May; 13(3):036004. PubMed ID: 27203470
[TBL] [Abstract][Full Text] [Related]
39. Exact results for a noise-induced bistable system.
Houchmandzadeh B; Vallade M
Phys Rev E Stat Nonlin Soft Matter Phys; 2015 Feb; 91(2):022115. PubMed ID: 25768466
[TBL] [Abstract][Full Text] [Related]
40. Solving the chemical master equation using sliding windows.
Wolf V; Goel R; Mateescu M; Henzinger TA
BMC Syst Biol; 2010 Apr; 4():42. PubMed ID: 20377904
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
