182 related articles for article (PubMed ID: 38365920)
21. BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.
Payne A; Holmes N; Rakyan V; Loose M
Bioinformatics; 2019 Jul; 35(13):2193-2198. PubMed ID: 30462145
[TBL] [Abstract][Full Text] [Related]
22. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
Leung AW; Leung HC; Wong CL; Zheng ZX; Lui WW; Luk HM; Lo IF; Luo R; Lam TW
BMC Med Genomics; 2022 Mar; 15(1):43. PubMed ID: 35246132
[TBL] [Abstract][Full Text] [Related]
23. Flexible and efficient handling of nanopore sequencing signal data with slow5tools.
Samarakoon H; Ferguson JM; Jenner SP; Amos TG; Parameswaran S; Gamaarachchi H; Deveson IW
Genome Biol; 2023 Apr; 24(1):69. PubMed ID: 37024927
[TBL] [Abstract][Full Text] [Related]
24. Forensic nanopore sequencing of microhaplotype markers using QitanTech's QNome.
Wang Z; Qin L; Liu J; Jiang L; Zou X; Chen X; Song F; Dai H; Hou Y
Forensic Sci Int Genet; 2022 Mar; 57():102657. PubMed ID: 34973558
[TBL] [Abstract][Full Text] [Related]
25. Mapping DNA methylation with high-throughput nanopore sequencing.
Rand AC; Jain M; Eizenga JM; Musselman-Brown A; Olsen HE; Akeson M; Paten B
Nat Methods; 2017 Apr; 14(4):411-413. PubMed ID: 28218897
[TBL] [Abstract][Full Text] [Related]
26. DeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing.
Fang L; Liu Q; Monteys AM; Gonzalez-Alegre P; Davidson BL; Wang K
Genome Biol; 2022 Apr; 23(1):108. PubMed ID: 35484600
[TBL] [Abstract][Full Text] [Related]
27. pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls.
Snajder R; Leger A; Stegle O; Bonder MJ
Genome Biol; 2023 Apr; 24(1):83. PubMed ID: 37081487
[TBL] [Abstract][Full Text] [Related]
28. Simulation of nanopore sequencing signal data with tunable parameters.
Gamaarachchi H; Ferguson JM; Samarakoon H; Liyanage K; Deveson IW
Genome Res; 2024 Jun; 34(5):778-783. PubMed ID: 38692839
[TBL] [Abstract][Full Text] [Related]
29. Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation.
Kolmogorov M; Billingsley KJ; Mastoras M; Meredith M; Monlong J; Lorig-Roach R; Asri M; Alvarez Jerez P; Malik L; Dewan R; Reed X; Genner RM; Daida K; Behera S; Shafin K; Pesout T; Prabakaran J; Carnevali P; Yang J; Rhie A; Scholz SW; Traynor BJ; Miga KH; Jain M; Timp W; Phillippy AM; Chaisson M; Sedlazeck FJ; Blauwendraat C; Paten B
Nat Methods; 2023 Oct; 20(10):1483-1492. PubMed ID: 37710018
[TBL] [Abstract][Full Text] [Related]
30. Approaches to Whole Mitochondrial Genome Sequencing on the Oxford Nanopore MinION.
Zascavage RR; Hall CL; Thorson K; Mahmoud M; Sedlazeck FJ; Planz JV
Curr Protoc Hum Genet; 2019 Dec; 104(1):e94. PubMed ID: 31743587
[TBL] [Abstract][Full Text] [Related]
31. Direct Sequencing of RNA and RNA Modification Identification Using Nanopore.
Wongsurawat T; Jenjaroenpun P; Nookaew I
Methods Mol Biol; 2022; 2477():71-77. PubMed ID: 35524112
[TBL] [Abstract][Full Text] [Related]
32. HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing.
Han R; Qi J; Xue Y; Sun X; Zhang F; Gao X; Li G
Genome Biol; 2023 Oct; 24(1):222. PubMed ID: 37798751
[TBL] [Abstract][Full Text] [Related]
33. Nanopore Flongle Sequencing as a Rapid, Single-Specimen Clinical Test for Fusion Detection.
Jeck WR; Iafrate AJ; Nardi V
J Mol Diagn; 2021 May; 23(5):630-636. PubMed ID: 33618057
[TBL] [Abstract][Full Text] [Related]
34. Polishing the Oxford Nanopore long-read assemblies of bacterial pathogens with Illumina short reads to improve genomic analyses.
Chen Z; Erickson DL; Meng J
Genomics; 2021 May; 113(3):1366-1377. PubMed ID: 33716184
[TBL] [Abstract][Full Text] [Related]
35. NanoDeep: a deep learning framework for nanopore adaptive sampling on microbial sequencing.
Lin Y; Zhang Y; Sun H; Jiang H; Zhao X; Teng X; Lin J; Shu B; Sun H; Liao Y; Zhou J
Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38189540
[TBL] [Abstract][Full Text] [Related]
36. Nanopore sequencing technology, bioinformatics and applications.
Wang Y; Zhao Y; Bollas A; Wang Y; Au KF
Nat Biotechnol; 2021 Nov; 39(11):1348-1365. PubMed ID: 34750572
[TBL] [Abstract][Full Text] [Related]
37. Comparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis.
Linde J; Brangsch H; Hölzer M; Thomas C; Elschner MC; Melzer F; Tomaso H
BMC Genomics; 2023 May; 24(1):258. PubMed ID: 37173617
[TBL] [Abstract][Full Text] [Related]
38. Real-time selective sequencing using nanopore technology.
Loose M; Malla S; Stout M
Nat Methods; 2016 Sep; 13(9):751-4. PubMed ID: 27454285
[TBL] [Abstract][Full Text] [Related]
39. Sequoia: an interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets.
Koonchanok R; Daulatabad SV; Mir Q; Reda K; Janga SC
BMC Genomics; 2021 Jul; 22(1):513. PubMed ID: 34233619
[TBL] [Abstract][Full Text] [Related]
40. Sequoia: A Framework for Visual Analysis of RNA Modifications from Direct RNA Sequencing Data.
Koonchanok R; Daulatabad SV; Reda K; Janga SC
Methods Mol Biol; 2023; 2624():127-138. PubMed ID: 36723813
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]