These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

203 related articles for article (PubMed ID: 38370872)

  • 1. rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R.
    Curd EE; Gal L; Gallego R; Silliman K; Nielsen S; Gold Z
    Environ DNA; 2024 Jan; 6(1):. PubMed ID: 38370872
    [TBL] [Abstract][Full Text] [Related]  

  • 2. rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R.
    Curd EE; Gal L; Gallego R; Nielsen S; Gold Z
    bioRxiv; 2023 Jun; ():. PubMed ID: 37397980
    [TBL] [Abstract][Full Text] [Related]  

  • 3. crabs-A software program to generate curated reference databases for metabarcoding sequencing data.
    Jeunen GJ; Dowle E; Edgecombe J; von Ammon U; Gemmell NJ; Cross H
    Mol Ecol Resour; 2023 Apr; 23(3):725-738. PubMed ID: 36437603
    [TBL] [Abstract][Full Text] [Related]  

  • 4. taxalogue: a toolkit to create comprehensive CO1 reference databases.
    Noll NW; Scherber C; Schäffler L
    PeerJ; 2023; 11():e16253. PubMed ID: 38077427
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem.
    Gold Z; Curd EE; Goodwin KD; Choi ES; Frable BW; Thompson AR; Walker HJ; Burton RS; Kacev D; Martz LD; Barber PH
    Mol Ecol Resour; 2021 Oct; 21(7):2546-2564. PubMed ID: 34235858
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data.
    Dubois B; Debode F; Hautier L; Hulin J; Martin GS; Delvaux A; Janssen E; Mingeot D
    BMC Genom Data; 2022 Jul; 23(1):53. PubMed ID: 35804326
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies.
    Mugnai F; Costantini F; Chenuil A; Leduc M; Gutiérrez Ortega JM; Meglécz E
    PeerJ; 2023; 11():e14616. PubMed ID: 36643652
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Management of DNA reference libraries for barcoding and metabarcoding studies with the R package refdb.
    Keck F; Altermatt F
    Mol Ecol Resour; 2023 Feb; 23(2):511-518. PubMed ID: 36239541
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RESCRIPt: Reproducible sequence taxonomy reference database management.
    Robeson MS; O'Rourke DR; Kaehler BD; Ziemski M; Dillon MR; Foster JT; Bokulich NA
    PLoS Comput Biol; 2021 Nov; 17(11):e1009581. PubMed ID: 34748542
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding.
    Banchi E; Ametrano CG; Greco S; Stanković D; Muggia L; Pallavicini A
    Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32016319
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences.
    Balech B; Sandioniggi A; Marzano M; Pesole G; Santamaria M
    Database (Oxford); 2022 Feb; 2022():. PubMed ID: 35134858
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Introducing an rbcL and a trnL reference library to aid in the metabarcoding analysis of foraged plants from two semi-arid eastern South African savanna bioregions.
    Botha D; du Plessis M; Siebert F; Barnard S
    PLoS One; 2023; 18(5):e0286144. PubMed ID: 37205700
    [TBL] [Abstract][Full Text] [Related]  

  • 13. How reliable is metabarcoding for pollen identification? An evaluation of different taxonomic assignment strategies by cross-validation.
    San Martin G; Hautier L; Mingeot D; Dubois B
    PeerJ; 2024; 12():e16567. PubMed ID: 38313030
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Metabarcoding free-living marine nematodes using curated 18S and CO1 reference sequence databases for species-level taxonomic assignments.
    Macheriotou L; Guilini K; Bezerra TN; Tytgat B; Nguyen DT; Phuong Nguyen TX; Noppe F; Armenteros M; Boufahja F; Rigaux A; Vanreusel A; Derycke S
    Ecol Evol; 2019 Feb; 9(3):1211-1226. PubMed ID: 30805154
    [TBL] [Abstract][Full Text] [Related]  

  • 15. COInr and mkCOInr: Building and customizing a nonredundant barcoding reference database from BOLD and NCBI using a semi-automated pipeline.
    Meglécz E
    Mol Ecol Resour; 2023 May; 23(4):933-945. PubMed ID: 36656075
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Curation of a reference database of COI sequences for insect identification through DNA metabarcoding: COins.
    Magoga G; Forni G; Brunetti M; Meral A; Spada A; De Biase A; Montagna M
    Database (Oxford); 2022 Jul; 2022():. PubMed ID: 35796594
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Meta-Fish-Lib: A generalised, dynamic DNA reference library pipeline for metabarcoding of fishes.
    Collins RA; Trauzzi G; Maltby KM; Gibson TI; Ratcliffe FC; Hallam J; Rainbird S; Maclaine J; Henderson PA; Sims DW; Mariani S; Genner MJ
    J Fish Biol; 2021 Oct; 99(4):1446-1454. PubMed ID: 34269417
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies.
    Axtner J; Crampton-Platt A; Hörig LA; Mohamed A; Xu CCY; Yu DW; Wilting A
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30997489
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Skimming for barcodes: rapid production of mitochondrial genome and nuclear ribosomal repeat reference markers through shallow shotgun sequencing.
    Hoban ML; Whitney J; Collins AG; Meyer C; Murphy KR; Reft AJ; Bemis KE
    PeerJ; 2022; 10():e13790. PubMed ID: 35959477
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses.
    Zepeda-Mendoza ML; Bohmann K; Carmona Baez A; Gilbert MT
    BMC Res Notes; 2016 May; 9():255. PubMed ID: 27142414
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.