These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 38371920)

  • 1. HiTaxon: a hierarchical ensemble framework for taxonomic classification of short reads.
    Verma B; Parkinson J
    Bioinform Adv; 2024; 4(1):vbae016. PubMed ID: 38371920
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities.
    Taj B; Adeolu M; Xiong X; Ang J; Nursimulu N; Parkinson J
    Microbiome; 2023 Jun; 11(1):143. PubMed ID: 37370188
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Re-purposing software for functional characterization of the microbiome.
    Gardiner LJ; Haiminen N; Utro F; Parida L; Seabolt E; Krishna R; Kaufman JH
    Microbiome; 2021 Jan; 9(1):4. PubMed ID: 33422152
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
    Portik DM; Brown CT; Pierce-Ward NT
    BMC Bioinformatics; 2022 Dec; 23(1):541. PubMed ID: 36513983
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities.
    Dacey DP; Chain FJJ
    BMC Bioinformatics; 2021 Oct; 22(1):493. PubMed ID: 34641782
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale machine learning for metagenomics sequence classification.
    Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
    Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaCache: context-aware classification of metagenomic reads using minhashing.
    Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
    Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks.
    Gori F; Folino G; Jetten MS; Marchiori E
    Bioinformatics; 2011 Jan; 27(2):196-203. PubMed ID: 21127032
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities.
    Daisley BA; Reid G
    mSystems; 2021 Apr; 6(2):. PubMed ID: 33824193
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sketching and sampling approaches for fast and accurate long read classification.
    Das A; Schatz MC
    BMC Bioinformatics; 2022 Oct; 23(1):452. PubMed ID: 36316646
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning.
    Shang J; Sun Y
    Methods; 2021 May; 189():95-103. PubMed ID: 32454212
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.
    Cavattoni M; Comin M
    J Comput Biol; 2023 Jun; 30(6):633-647. PubMed ID: 37023405
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CSSSCL: a python package that uses combined sequence similarity scores for accurate taxonomic classification of long and short sequence reads.
    Borozan I; Ferretti V
    Bioinformatics; 2016 Feb; 32(3):453-5. PubMed ID: 26454281
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Higher-order Markov models for metagenomic sequence classification.
    Burks DJ; Azad RK
    Bioinformatics; 2020 Aug; 36(14):4130-4136. PubMed ID: 32516355
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MNBC: a multithreaded Minimizer-based Naïve Bayes Classifier for improved metagenomic sequence classification.
    Lu R; Dumonceaux T; Anzar M; Zovoilis A; Antonation K; Barker D; Corbett C; Nadon C; Robertson J; Eagle SHC; Lung O; Rudar J; Surujballi O; Laing C
    Bioinformatics; 2024 Oct; 40(10):. PubMed ID: 39388213
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ganon: precise metagenomics classification against large and up-to-date sets of reference sequences.
    Piro VC; Dadi TH; Seiler E; Reinert K; Renard BY
    Bioinformatics; 2020 Jul; 36(Suppl_1):i12-i20. PubMed ID: 32657362
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products.
    Meola M; Rifa E; Shani N; Delbès C; Berthoud H; Chassard C
    BMC Genomics; 2019 Jul; 20(1):560. PubMed ID: 31286860
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
    Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
    BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.