These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 38397134)

  • 1. DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery.
    Cho HJ; Wang Z; Cong Y; Bekiranov S; Zhang A; Zang C
    Genes (Basel); 2024 Jan; 15(2):. PubMed ID: 38397134
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deep Learning of Sequence Patterns for CCCTC-Binding Factor-Mediated Chromatin Loop Formation.
    Kuang S; Wang L
    J Comput Biol; 2021 Feb; 28(2):133-145. PubMed ID: 33232622
    [No Abstract]   [Full Text] [Related]  

  • 3. Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation.
    Fang C; Wang Z; Han C; Safgren SL; Helmin KA; Adelman ER; Serafin V; Basso G; Eagen KP; Gaspar-Maia A; Figueroa ME; Singer BD; Ratan A; Ntziachristos P; Zang C
    Genome Biol; 2020 Sep; 21(1):247. PubMed ID: 32933554
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia.
    Smits WK; Vermeulen C; Hagelaar R; Kimura S; Vroegindeweij EM; Buijs-Gladdines JGCAM; van de Geer E; Verstegen MJAM; Splinter E; van Reijmersdal SV; Buijs A; Galjart N; van Eyndhoven W; van Min M; Kuiper R; Kemmeren P; Mullighan CG; de Laat W; Meijerink JPP
    Cell Rep; 2023 Apr; 42(4):112373. PubMed ID: 37060567
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF.
    Ciccone DN; Namiki Y; Chen C; Morshead KB; Wood AL; Johnston CM; Morris JW; Wang Y; Sadreyev R; Corcoran AE; Matthews AGW; Oettinger MA
    J Biol Chem; 2019 Sep; 294(37):13580-13592. PubMed ID: 31285261
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AML displays increased CTCF occupancy associated with aberrant gene expression and transcription factor binding.
    Mujahed H; Miliara S; Neddermeyer A; Bengtzén S; Nilsson C; Deneberg S; Cordeddu L; Ekwall K; Lennartsson A; Lehmann S
    Blood; 2020 Jul; 136(3):339-352. PubMed ID: 32232485
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PARP1 Stabilizes CTCF Binding and Chromatin Structure To Maintain Epstein-Barr Virus Latency Type.
    Lupey-Green LN; Caruso LB; Madzo J; Martin KA; Tan Y; Hulse M; Tempera I
    J Virol; 2018 Sep; 92(18):. PubMed ID: 29976663
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Neural network modeling of differential binding between wild-type and mutant CTCF reveals putative binding preferences for zinc fingers 1-2.
    Kaplow IM; Banerjee A; Foo CS
    BMC Genomics; 2022 Apr; 23(1):295. PubMed ID: 35410161
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A sequence-based deep learning approach to predict CTCF-mediated chromatin loop.
    Lv H; Dao FY; Zulfiqar H; Su W; Ding H; Liu L; Lin H
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33634313
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Alteration of CTCF-associated chromatin neighborhood inhibits TAL1-driven oncogenic transcription program and leukemogenesis.
    Li Y; Liao Z; Luo H; Benyoucef A; Kang Y; Lai Q; Dovat S; Miller B; Chepelev I; Li Y; Zhao K; Brand M; Huang S
    Nucleic Acids Res; 2020 Apr; 48(6):3119-3133. PubMed ID: 32086528
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CTCF boundary remodels chromatin domain and drives aberrant
    Luo H; Wang F; Zha J; Li H; Yan B; Du Q; Yang F; Sobh A; Vulpe C; Drusbosky L; Cogle C; Chepelev I; Xu B; Nimer SD; Licht J; Qiu Y; Chen B; Xu M; Huang S
    Blood; 2018 Aug; 132(8):837-848. PubMed ID: 29760161
    [No Abstract]   [Full Text] [Related]  

  • 12. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
    Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
    Front Immunol; 2018; 9():425. PubMed ID: 29593713
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Testis-specific transcriptional regulators selectively occupy BORIS-bound CTCF target regions in mouse male germ cells.
    Rivero-Hinojosa S; Kang S; Lobanenkov VV; Zentner GE
    Sci Rep; 2017 Feb; 7():41279. PubMed ID: 28145452
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting CTCF-mediated chromatin loops using CTCF-MP.
    Zhang R; Wang Y; Yang Y; Zhang Y; Ma J
    Bioinformatics; 2018 Jul; 34(13):i133-i141. PubMed ID: 29949986
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features.
    Essien K; Vigneau S; Apreleva S; Singh LN; Bartolomei MS; Hannenhalli S
    Genome Biol; 2009; 10(11):R131. PubMed ID: 19922652
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.
    Khoury A; Achinger-Kawecka J; Bert SA; Smith GC; French HJ; Luu PL; Peters TJ; Du Q; Parry AJ; Valdes-Mora F; Taberlay PC; Stirzaker C; Statham AL; Clark SJ
    Nat Commun; 2020 Jan; 11(1):54. PubMed ID: 31911579
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features.
    Kai Y; Andricovich J; Zeng Z; Zhu J; Tzatsos A; Peng W
    Nat Commun; 2018 Oct; 9(1):4221. PubMed ID: 30310060
    [TBL] [Abstract][Full Text] [Related]  

  • 18. LncRNA PCGEM1 promotes colorectal cancer cell proliferation and migration in positive feedback loop through PCGEM1/miR-433-3p/CTCF axis.
    Xu W; Wu L; Lu H; Xiang X; Wang F; Li S
    Pathol Res Pract; 2022 Sep; 237():154017. PubMed ID: 35872368
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CGGBP1-dependent CTCF-binding sites restrict ectopic transcription.
    Patel D; Patel M; Datta S; Singh U
    Cell Cycle; 2021 Nov; 20(22):2387-2401. PubMed ID: 34585631
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HTLV-1 CTCF-binding site is dispensable for in vitro immortalization and persistent infection in vivo.
    Martinez MP; Cheng X; Joseph A; Al-Saleem J; Panfil AR; Palettas M; Dirksen WP; Ratner L; Green PL
    Retrovirology; 2019 Dec; 16(1):44. PubMed ID: 31864373
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.