These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

131 related articles for article (PubMed ID: 38407280)

  • 1. Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification.
    Sandås K; Lewerentz J; Karlsson E; Karlsson L; Sundell D; Simonyté-Sjödin K; Sjödin A
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38407280
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
    Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA
    BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209
    [TBL] [Abstract][Full Text] [Related]  

  • 3. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.
    Santos JD; Sobral D; Pinheiro M; Isidro J; Bogaardt C; Pinto M; Eusébio R; Santos A; Mamede R; Horton DL; Gomes JP; ; Borges V
    Genome Med; 2024 Apr; 16(1):61. PubMed ID: 38659008
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
    Volant S; Lechat P; Woringer P; Motreff L; Campagne P; Malabat C; Kennedy S; Ghozlane A
    BMC Bioinformatics; 2020 Aug; 21(1):345. PubMed ID: 32778056
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS).
    Deshpande SV; Reed TM; Sullivan RF; Kerkhof LJ; Beigel KM; Wade MM
    Genes (Basel); 2019 Jul; 10(8):. PubMed ID: 31366182
    [TBL] [Abstract][Full Text] [Related]  

  • 6. iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data.
    Patel MV
    Bioinformatics; 2018 Dec; 34(24):4305-4306. PubMed ID: 29982379
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Tamock: simulation of habitat-specific benchmark data in metagenomics.
    Gerner SM; Graf AB; Rattei T
    BMC Bioinformatics; 2021 May; 22(1):227. PubMed ID: 33932979
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
    Welzel M; Lange A; Heider D; Schwarz M; Freisleben B; Jensen M; Boenigk J; Beisser D
    BMC Bioinformatics; 2020 Nov; 21(1):526. PubMed ID: 33198651
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets.
    Czajkowski MD; Vance DP; Frese SA; Casaburi G
    Bioinformatics; 2019 Jul; 35(13):2318-2319. PubMed ID: 30475995
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Flexible metagenome analysis using the MGX framework.
    Jaenicke S; Albaum SP; Blumenkamp P; Linke B; Stoye J; Goesmann A
    Microbiome; 2018 Apr; 6(1):76. PubMed ID: 29690922
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.
    Dufresne Y; Lejzerowicz F; Perret-Gentil LA; Pawlowski J; Cordier T
    BMC Bioinformatics; 2019 Feb; 20(1):88. PubMed ID: 30782112
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PIMGAVir and Vir-MinION: Two Viral Metagenomic Pipelines for Complete Baseline Analysis of 2nd and 3rd Generation Data.
    Mastriani E; Bienes KM; Wong G; Berthet N
    Viruses; 2022 Jun; 14(6):. PubMed ID: 35746732
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NanopoReaTA: a user-friendly tool for nanopore-seq real-time transcriptional analysis.
    Wierczeiko A; Pastore S; Mündnich S; Busch AM; Dietrich V; Helm M; Butto T; Gerber S
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37549052
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
    Chen Z; Grim CJ; Ramachandran P; Meng J
    Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis.
    Ru J; Khan Mirzaei M; Xue J; Peng X; Deng L
    Gut Microbes; 2023; 15(1):2192522. PubMed ID: 36998174
    [TBL] [Abstract][Full Text] [Related]  

  • 17. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
    Kalantar KL; Carvalho T; de Bourcy CFA; Dimitrov B; Dingle G; Egger R; Han J; Holmes OB; Juan YF; King R; Kislyuk A; Lin MF; Mariano M; Morse T; Reynoso LV; Cruz DR; Sheu J; Tang J; Wang J; Zhang MA; Zhong E; Ahyong V; Lay S; Chea S; Bohl JA; Manning JE; Tato CM; DeRisi JL
    Gigascience; 2020 Oct; 9(10):. PubMed ID: 33057676
    [TBL] [Abstract][Full Text] [Related]  

  • 18. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline.
    Krapohl J; Pickett BE
    F1000Res; 2022; 11():265. PubMed ID: 37469625
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data.
    Hu X; Hurtado-Gonzales OP; Adhikari BN; French-Monar RD; Malapi M; Foster JA; McFarland CD
    BMC Bioinformatics; 2023 Dec; 24(1):470. PubMed ID: 38093207
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.