201 related articles for article (PubMed ID: 38417437)
1. Cross-evaluation of E. coli's operon structures via a whole-cell model suggests alternative cellular benefits for low- versus high-expressing operons.
Sun G; DeFelice MM; Gillies TE; Ahn-Horst TA; Andrews CJ; Krummenacker M; Karp PD; Morrison JH; Covert MW
Cell Syst; 2024 Mar; 15(3):227-245.e7. PubMed ID: 38417437
[TBL] [Abstract][Full Text] [Related]
2. Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing.
Conway T; Creecy JP; Maddox SM; Grissom JE; Conkle TL; Shadid TM; Teramoto J; San Miguel P; Shimada T; Ishihama A; Mori H; Wanner BL
mBio; 2014 Jul; 5(4):e01442-14. PubMed ID: 25006232
[TBL] [Abstract][Full Text] [Related]
3. A computational system for identifying operons based on RNA-seq data.
Tjaden B
Methods; 2020 Apr; 176():62-70. PubMed ID: 30953757
[TBL] [Abstract][Full Text] [Related]
4. Operon formation is driven by co-regulation and not by horizontal gene transfer.
Price MN; Huang KH; Arkin AP; Alm EJ
Genome Res; 2005 Jun; 15(6):809-19. PubMed ID: 15930492
[TBL] [Abstract][Full Text] [Related]
5. Predicted transcription factor binding sites as predictors of operons in Escherichia coli and Streptomyces coelicolor.
Laing E; Sidhu K; Hubbard SJ
BMC Genomics; 2008 Feb; 9():79. PubMed ID: 18269733
[TBL] [Abstract][Full Text] [Related]
6. Prediction and analysis of metagenomic operons via MetaRon: a pipeline for prediction of Metagenome and whole-genome opeRons.
Zaidi SSA; Kayani MUR; Zhang X; Ouyang Y; Shamsi IH
BMC Genomics; 2021 Jan; 22(1):60. PubMed ID: 33468056
[TBL] [Abstract][Full Text] [Related]
7. Evolutionary conservation of bacterial operons: does transcriptional connectivity matter?
Hazkani-Covo E; Graur D
Genetica; 2005 Jul; 124(2-3):145-66. PubMed ID: 16134329
[TBL] [Abstract][Full Text] [Related]
8. The life-cycle of operons.
Price MN; Arkin AP; Alm EJ
PLoS Genet; 2006 Jun; 2(6):e96. PubMed ID: 16789824
[TBL] [Abstract][Full Text] [Related]
9. Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization.
Thiele I; Jamshidi N; Fleming RM; Palsson BØ
PLoS Comput Biol; 2009 Mar; 5(3):e1000312. PubMed ID: 19282977
[TBL] [Abstract][Full Text] [Related]
10. The operonic location of auto-transcriptional repressors is highly conserved in bacteria.
Rubinstein ND; Zeevi D; Oren Y; Segal G; Pupko T
Mol Biol Evol; 2011 Dec; 28(12):3309-18. PubMed ID: 21690561
[TBL] [Abstract][Full Text] [Related]
11. SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data.
Wenzel MA; Müller B; Pettitt J
BMC Bioinformatics; 2021 Mar; 22(1):140. PubMed ID: 33752599
[TBL] [Abstract][Full Text] [Related]
12. Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation.
Junier I; Rivoire O
PLoS One; 2016; 11(5):e0155740. PubMed ID: 27195891
[TBL] [Abstract][Full Text] [Related]
13. Post-transcriptional operons and regulons co-ordinating gene expression.
Keene JD; Lager PJ
Chromosome Res; 2005; 13(3):327-37. PubMed ID: 15868425
[TBL] [Abstract][Full Text] [Related]
14. Differential regulation of multiple overlapping promoters in flagellar class II operons in Escherichia coli.
Liu X; Matsumura P
Mol Microbiol; 1996 Aug; 21(3):613-20. PubMed ID: 8866483
[TBL] [Abstract][Full Text] [Related]
15. Computational identification of operons in microbial genomes.
Zheng Y; Szustakowski JD; Fortnow L; Roberts RJ; Kasif S
Genome Res; 2002 Aug; 12(8):1221-30. PubMed ID: 12176930
[TBL] [Abstract][Full Text] [Related]
16. Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli.
Richard DJ; Sawers G; Sargent F; McWalter L; Boxer DH
Microbiology (Reading); 1999 Oct; 145 ( Pt 10)():2903-12. PubMed ID: 10537212
[TBL] [Abstract][Full Text] [Related]
17. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655.
Ohnishi M; Murata T; Nakayama K; Kuhara S; Hattori M; Kurokawa K; Yasunaga T; Yokoyama K; Makino K; Shinagawa H; Hayashi T
Syst Appl Microbiol; 2000 Oct; 23(3):315-24. PubMed ID: 11108008
[TBL] [Abstract][Full Text] [Related]
18. SMRT-Cappable-seq reveals complex operon variants in bacteria.
Yan B; Boitano M; Clark TA; Ettwiller L
Nat Commun; 2018 Sep; 9(1):3676. PubMed ID: 30201986
[TBL] [Abstract][Full Text] [Related]
19. Regulation of Ribosomal Protein Operons rplM-rpsI, rpmB-rpmG, and rplU-rpmA at the Transcriptional and Translational Levels.
Aseev LV; Koledinskaya LS; Boni IV
J Bacteriol; 2016 Sep; 198(18):2494-502. PubMed ID: 27381917
[TBL] [Abstract][Full Text] [Related]
20. Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification.
Zhao J; Zhang H; Qin B; Nikolay R; He QY; Spahn CMT; Zhang G
Front Genet; 2019; 10():473. PubMed ID: 31178895
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]