BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

317 related articles for article (PubMed ID: 38419630)

  • 1. A comprehensive overview of microbiome data in the light of machine learning applications: categorization, accessibility, and future directions.
    Kumar B; Lorusso E; Fosso B; Pesole G
    Front Microbiol; 2024; 15():1343572. PubMed ID: 38419630
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SKIOME Project: a curated collection of skin microbiome datasets enriched with study-related metadata.
    Agostinetto G; Bozzi D; Porro D; Casiraghi M; Labra M; Bruno A
    Database (Oxford); 2022 May; 2022():. PubMed ID: 35576001
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights.
    Pasolli E; Truong DT; Malik F; Waldron L; Segata N
    PLoS Comput Biol; 2016 Jul; 12(7):e1004977. PubMed ID: 27400279
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Patient-Related Metadata Reported in Sequencing Studies of SARS-CoV-2: Protocol for a Scoping Review and Bibliometric Analysis.
    O'Connor K; Weissenbacher D; Elyaderani A; Lautenbach E; Scotch M; Gonzalez-Hernandez G
    medRxiv; 2024 Mar; ():. PubMed ID: 37503241
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
    Fellows Yates JA; Andrades Valtueña A; Vågene ÅJ; Cribdon B; Velsko IM; Borry M; Bravo-Lopez MJ; Fernandez-Guerra A; Green EJ; Ramachandran SL; Heintzman PD; Spyrou MA; Hübner A; Gancz AS; Hider J; Allshouse AF; Zaro V; Warinner C
    Sci Data; 2021 Jan; 8(1):31. PubMed ID: 33500403
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
    Chung YW; Gwak HJ; Moon S; Rho M; Ryu JH
    PLoS One; 2020; 15(1):e0227886. PubMed ID: 31978162
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Investigation of machine learning algorithms for taxonomic classification of marine metagenomes.
    Park H; Lim SJ; Cosme J; O'Connell K; Sandeep J; Gayanilo F; Cutter GR; Montes E; Nitikitpaiboon C; Fisher S; Moustahfid H; Thompson LR
    Microbiol Spectr; 2023 Sep; 11(5):e0523722. PubMed ID: 37695074
    [TBL] [Abstract][Full Text] [Related]  

  • 8. AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata.
    Liang X; Akers K; Keenum I; Wind L; Gupta S; Chen C; Aldaihani R; Pruden A; Zhang L; Knowlton KF; Xia K; Heath LS
    BMC Bioinformatics; 2021 Mar; 22(1):117. PubMed ID: 33691615
    [TBL] [Abstract][Full Text] [Related]  

  • 9. HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes.
    Kasmanas JC; Bartholomäus A; Corrêa FB; Tal T; Jehmlich N; Herberth G; von Bergen M; Stadler PF; Carvalho ACPLF; Nunes da Rocha U
    Nucleic Acids Res; 2021 Jan; 49(D1):D743-D750. PubMed ID: 33221926
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
    Brumfield KD; Huq A; Colwell RR; Olds JL; Leddy MB
    PLoS One; 2020; 15(2):e0228899. PubMed ID: 32053657
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes.
    Avila Santos AP; Kabiru Nata'ala M; Kasmanas JC; Bartholomäus A; Keller-Costa T; Jurburg SD; Tal T; Camarinha-Silva A; Saraiva JP; Ponce de Leon Ferreira de Carvalho AC; Stadler PF; Sipoli Sanches D; Rocha U
    Anim Microbiome; 2023 Oct; 5(1):48. PubMed ID: 37798675
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies.
    Martínez Arbas S; Busi SB; Queirós P; de Nies L; Herold M; May P; Wilmes P; Muller EEL; Narayanasamy S
    Front Genet; 2021; 12():666244. PubMed ID: 34194470
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Core of the saliva microbiome: an analysis of the MG-RAST data.
    Oliveira SG; Nishiyama RR; Trigo CAC; Mattos-Guaraldi AL; Dávila AMR; Jardim R; Aguiar FHB
    BMC Oral Health; 2021 Jul; 21(1):351. PubMed ID: 34271900
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The African Human Microbiome Portal: a public web portal of curated metagenomic metadata.
    Kiran A; Hanachi M; Alsayed N; Fassatoui M; Oduaran OH; Allali I; Maslamoney S; Meintjes A; Zass L; Rocha JD; Kefi R; Benkahla A; Ghedira K; Panji S; Mulder N; Fadlelmola FM; Souiai O
    Database (Oxford); 2024 Jan; 2024():. PubMed ID: 38204360
    [TBL] [Abstract][Full Text] [Related]  

  • 16. grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
    Taylor LJ; Abbas A; Bushman FD
    Bioinformatics; 2020 Jun; 36(11):3607-3609. PubMed ID: 32154830
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data.
    Chen JC; Tyler AD
    Biol Direct; 2020 Dec; 15(1):29. PubMed ID: 33302990
    [TBL] [Abstract][Full Text] [Related]  

  • 18. iVikodak-A Platform and Standard Workflow for Inferring, Analyzing, Comparing, and Visualizing the Functional Potential of Microbial Communities.
    Nagpal S; Haque MM; Singh R; Mande SS
    Front Microbiol; 2018; 9():3336. PubMed ID: 30692979
    [No Abstract]   [Full Text] [Related]  

  • 19. Toward Accurate and Quantitative Comparative Metagenomics.
    Nayfach S; Pollard KS
    Cell; 2016 Aug; 166(5):1103-1116. PubMed ID: 27565341
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Critical assessment of chromatographic metadata in publicly available metabolomics data repositories.
    Harrieder EM; Kretschmer F; Dunn W; Böcker S; Witting M
    Metabolomics; 2022 Nov; 18(12):97. PubMed ID: 36436113
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.