These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

119 related articles for article (PubMed ID: 38431867)

  • 61. Elastic network models and molecular dynamic simulations reveal the molecular basis of allosteric regulation in ubiquitin-specific protease 7 (USP7).
    Xu J; Wang Y; Zhang J; Abdelmoneim AA; Liang Z; Wang L; Jin J; Dai Q; Ye F
    Comput Biol Med; 2023 Aug; 162():107068. PubMed ID: 37290391
    [TBL] [Abstract][Full Text] [Related]  

  • 62. Cryptic pocket formation underlies allosteric modulator selectivity at muscarinic GPCRs.
    Hollingsworth SA; Kelly B; Valant C; Michaelis JA; Mastromihalis O; Thompson G; Venkatakrishnan AJ; Hertig S; Scammells PJ; Sexton PM; Felder CC; Christopoulos A; Dror RO
    Nat Commun; 2019 Jul; 10(1):3289. PubMed ID: 31337749
    [TBL] [Abstract][Full Text] [Related]  

  • 63. Extrahelical Binding Site for a 1
    Fisher CL; Pavan M; Salmaso V; Keyes RF; Wan TC; Pradhan B; Gao ZG; Smith BC; Jacobson KA; Auchampach JA
    Mol Pharmacol; 2024 Feb; 105(3):213-223. PubMed ID: 38182432
    [TBL] [Abstract][Full Text] [Related]  

  • 64. The size matters? A computational tool to design bivalent ligands.
    Pérez-Benito L; Henry A; Matsoukas MT; Lopez L; Pulido D; Royo M; Cordomí A; Tresadern G; Pardo L
    Bioinformatics; 2018 Nov; 34(22):3857-3863. PubMed ID: 29850769
    [TBL] [Abstract][Full Text] [Related]  

  • 65. Allosteric mechanism of an oximino-piperidino-piperidine antagonist for the CCR5 chemokine receptor.
    Zhang Y; Chen HF
    Chem Biol Drug Des; 2020 Jan; 95(1):113-123. PubMed ID: 31571405
    [TBL] [Abstract][Full Text] [Related]  

  • 66. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
    Dang LT; Tondl M; Chiu MHH; Revote J; Paten B; Tano V; Tokolyi A; Besse F; Quaife-Ryan G; Cumming H; Drvodelic MJ; Eichenlaub MP; Hallab JC; Stolper JS; Rossello FJ; Bogoyevitch MA; Jans DA; Nim HT; Porrello ER; Hudson JE; Ramialison M
    BMC Genomics; 2018 Apr; 19(1):238. PubMed ID: 29621972
    [TBL] [Abstract][Full Text] [Related]  

  • 67. iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets.
    Chen Z; Liu X; Zhao P; Li C; Wang Y; Li F; Akutsu T; Bain C; Gasser RB; Li J; Yang Z; Gao X; Kurgan L; Song J
    Nucleic Acids Res; 2022 Jul; 50(W1):W434-W447. PubMed ID: 35524557
    [TBL] [Abstract][Full Text] [Related]  

  • 68. Molecular Docking Simulations with ArgusLab.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():203-220. PubMed ID: 31452107
    [TBL] [Abstract][Full Text] [Related]  

  • 69. BML: a versatile web server for bipartite motif discovery.
    Vahed M; Vahed M; Garmire LX
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34974623
    [TBL] [Abstract][Full Text] [Related]  

  • 70. DeepBindPoc: a deep learning method to rank ligand binding pockets using molecular vector representation.
    Zhang H; Saravanan KM; Lin J; Liao L; Ng JT; Zhou J; Wei Y
    PeerJ; 2020; 8():e8864. PubMed ID: 32292649
    [TBL] [Abstract][Full Text] [Related]  

  • 71. Structure-based exploration of an allosteric binding pocket in the NTS1 receptor using bitopic NT(8-13) derivatives and molecular dynamics simulations.
    Kling RC; Burchardt C; Einsiedel J; Hübner H; Gmeiner P
    J Mol Model; 2019 Jun; 25(7):193. PubMed ID: 31209646
    [TBL] [Abstract][Full Text] [Related]  

  • 72. AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations.
    Tan ZW; Guarnera E; Tee WV; Berezovsky IN
    Nucleic Acids Res; 2020 Jul; 48(W1):W116-W124. PubMed ID: 32392302
    [TBL] [Abstract][Full Text] [Related]  

  • 73. Comprehensive Approach to Simulating Large Scale Conformational Changes in Biological Systems Utilizing a Path Collective Variable and New Barrier Restraint.
    Kolossváry I; Sherman W
    J Phys Chem B; 2023 Jun; 127(23):5214-5229. PubMed ID: 37279354
    [TBL] [Abstract][Full Text] [Related]  

  • 74. Progress on open chemoinformatic tools for expanding and exploring the chemical space.
    Medina-Franco JL; Sánchez-Cruz N; López-López E; Díaz-Eufracio BI
    J Comput Aided Mol Des; 2022 May; 36(5):341-354. PubMed ID: 34143323
    [TBL] [Abstract][Full Text] [Related]  

  • 75. Molecular Dynamics Simulation Techniques as Tools in Drug Discovery and Pharmacology: A Focus on Allosteric Drugs.
    Platania CBM; Bucolo C
    Methods Mol Biol; 2021; 2253():245-254. PubMed ID: 33315227
    [TBL] [Abstract][Full Text] [Related]  

  • 76. CoNSEnsX
    Dudola D; Kovács B; Gáspári Z
    J Chem Inf Model; 2017 Aug; 57(8):1728-1734. PubMed ID: 28703583
    [TBL] [Abstract][Full Text] [Related]  

  • 77. CHK1 kinase inhibition: identification of allosteric hits using MD simulations, pharmacophore modeling, docking and MM-PBSA calculations.
    Al-Shar'i N; Musleh SS
    Mol Divers; 2022 Apr; 26(2):903-921. PubMed ID: 33686514
    [TBL] [Abstract][Full Text] [Related]  

  • 78. Negative allosteric modulators of cannabinoid receptor 2: protein modeling, binding site identification and molecular dynamics simulations in the presence of an orthosteric agonist.
    Pandey P; Roy KK; Doerksen RJ
    J Biomol Struct Dyn; 2020 Jan; 38(1):32-47. PubMed ID: 30652534
    [TBL] [Abstract][Full Text] [Related]  

  • 79. Enlighten2: molecular dynamics simulations of protein-ligand systems made accessible.
    Zinovjev K; van der Kamp MW
    Bioinformatics; 2020 Dec; 36(20):5104-5106. PubMed ID: 32683443
    [TBL] [Abstract][Full Text] [Related]  

  • 80. Application of Mixed-Solvent Molecular Dynamics Simulations for Prediction of Allosteric Sites on G Protein-Coupled Receptors.
    Chan WKB; Carlson HA; Traynor JR
    Mol Pharmacol; 2023 May; 103(5):274-285. PubMed ID: 36868791
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.