These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

119 related articles for article (PubMed ID: 38463499)

  • 1. Exploring gene content with pangene graphs.
    Li H; Marin M; Farhat MR
    ArXiv; 2024 May; ():. PubMed ID: 38463499
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Exploring gene content with pangene graphs.
    Li H; Marin M; Farhat MR
    Bioinformatics; 2024 Jul; ():. PubMed ID: 39041615
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ODGI: understanding pangenome graphs.
    Guarracino A; Heumos S; Nahnsen S; Prins P; Garrison E
    Bioinformatics; 2022 Jun; 38(13):3319-3326. PubMed ID: 35552372
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Unbiased pangenome graphs.
    Garrison E; Guarracino A
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36448683
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pangenome Analysis of Plant Transcripts and Coding Sequences.
    Contreras-Moreira B; Del Río ÁR; Cantalapiedra CP; Sancho R; Vinuesa P
    Methods Mol Biol; 2022; 2512():121-152. PubMed ID: 35818004
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Pangenome graph layout by Path-Guided Stochastic Gradient Descent.
    Heumos S; Guarracino A; Schmelzle JM; Li J; Zhang Z; Hagmann J; Nahnsen S; Prins P; Garrison E
    Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38960860
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Pangenome graph layout by Path-Guided Stochastic Gradient Descent.
    Heumos S; Guarracino A; Schmelzle JM; Li J; Zhang Z; Hagmann J; Nahnsen S; Prins P; Garrison E
    bioRxiv; 2023 Oct; ():. PubMed ID: 37790531
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Panacus: fast and exact pangenome growth and core size estimation.
    Parmigiani L; Garrison E; Stoye J; Marschall T; Doerr D
    bioRxiv; 2024 Jun; ():. PubMed ID: 38915671
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
    Tognon M; Bonnici V; Garrison E; Giugno R; Pinello L
    PLoS Comput Biol; 2021 Sep; 17(9):e1009444. PubMed ID: 34570769
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Efficient short read mapping to a pangenome that is represented by a graph of ED strings.
    Büchler T; Olbrich J; Ohlebusch E
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37171844
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparing methods for constructing and representing human pangenome graphs.
    Andreace F; Lechat P; Dufresne Y; Chikhi R
    Genome Biol; 2023 Nov; 24(1):274. PubMed ID: 38037131
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Co-linear chaining on pangenome graphs.
    Rajput J; Chandra G; Jain C
    Algorithms Mol Biol; 2024 Jan; 19(1):4. PubMed ID: 38279113
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies.
    Shapiro JW; Putonti C
    PeerJ; 2021; 9():e11950. PubMed ID: 34434663
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detecting high-scoring local alignments in pangenome graphs.
    Schulz T; Wittler R; Rahmann S; Hach F; Stoye J
    Bioinformatics; 2021 Aug; 37(16):2266-2274. PubMed ID: 33532821
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation.
    Contreras-Moreira B; Saraf S; Naamati G; Casas AM; Amberkar SS; Flicek P; Jones AR; Dyer S
    Genome Biol; 2023 Oct; 24(1):223. PubMed ID: 37798615
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Pseudoalteromonas multipartite genome: distribution and expression of pangene categories, and a hypothesis for the origin and evolution of the chromid.
    Sonnenberg CB; Haugen P
    G3 (Bethesda); 2021 Sep; 11(9):. PubMed ID: 34544144
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Hierarchical sets: analyzing pangenome structure through scalable set visualizations.
    Pedersen TL
    Bioinformatics; 2017 Jun; 33(11):1604-1612. PubMed ID: 28130242
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Efficient dynamic variation graphs.
    Eizenga JM; Novak AM; Kobayashi E; Villani F; Cisar C; Heumos S; Hickey G; Colonna V; Paten B; Garrison E
    Bioinformatics; 2021 Jan; 36(21):5139-5144. PubMed ID: 33040146
    [TBL] [Abstract][Full Text] [Related]  

  • 19. AGC: compact representation of assembled genomes with fast queries and updates.
    Deorowicz S; Danek A; Li H
    Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36864624
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GraphAligner: rapid and versatile sequence-to-graph alignment.
    Rautiainen M; Marschall T
    Genome Biol; 2020 Sep; 21(1):253. PubMed ID: 32972461
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.