These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

230 related articles for article (PubMed ID: 38467684)

  • 1. BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis.
    Qiu Z; Yuan L; Lian CA; Lin B; Chen J; Mu R; Qiao X; Zhang L; Xu Z; Fan L; Zhang Y; Wang S; Li J; Cao H; Li B; Chen B; Song C; Liu Y; Shi L; Tian Y; Ni J; Zhang T; Zhou J; Zhuang WQ; Yu K
    Nat Commun; 2024 Mar; 15(1):2179. PubMed ID: 38467684
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets.
    Yue Y; Huang H; Qi Z; Dou HM; Liu XY; Han TF; Chen Y; Song XJ; Zhang YH; Tu J
    BMC Bioinformatics; 2020 Jul; 21(1):334. PubMed ID: 32723290
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.
    Uritskiy GV; DiRuggiero J; Taylor J
    Microbiome; 2018 Sep; 6(1):158. PubMed ID: 30219103
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 5. HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.
    Du Y; Sun F
    Bioinformatics; 2022 May; 38(11):2973-2979. PubMed ID: 35482530
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ACR: metagenome-assembled prokaryotic and eukaryotic genome refinement tool.
    Seong HJ; Kim JJ; Sul WJ
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37889119
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking.
    Wu Z; Wang Y; Zeng J; Zhou Y
    BMC Genomics; 2022 Nov; 23(1):746. PubMed ID: 36352370
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fairy: fast approximate coverage for multi-sample metagenomic binning.
    Shaw J; Yu YW
    Microbiome; 2024 Aug; 12(1):151. PubMed ID: 39143609
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.
    Tao Y; Xun F; Zhao C; Mao Z; Li B; Xing P; Wu QL
    Microbiol Spectr; 2023 Feb; 11(1):e0332822. PubMed ID: 36475839
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A survey on computational strategies for genome-resolved gut metagenomics.
    Jia L; Wu Y; Dong Y; Chen J; Chen WH; Zhao XM
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 37114640
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Metagenomic binning with assembly graph embeddings.
    Lamurias A; Sereika M; Albertsen M; Hose K; Nielsen TD
    Bioinformatics; 2022 Sep; 38(19):4481-4487. PubMed ID: 35972375
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes.
    Pavia MJ; Chede A; Wu Z; Cadillo-Quiroz H; Zhu Q
    Microbiome; 2023 Aug; 11(1):186. PubMed ID: 37596696
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics.
    Arikawa K; Ide K; Kogawa M; Saeki T; Yoda T; Endoh T; Matsuhashi A; Takeyama H; Hosokawa M
    Microbiome; 2021 Oct; 9(1):202. PubMed ID: 34641955
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Unitig level assembly graph based metagenome-assembled genome refiner (UGMAGrefiner): A tool to increase completeness and resolution of metagenome-assembled genomes.
    Xiang B; Zhao L; Zhang M
    Comput Struct Biotechnol J; 2023; 21():2394-2404. PubMed ID: 37066122
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recovering metagenome-assembled genomes from shotgun metagenomic sequencing data: Methods, applications, challenges, and opportunities.
    Zhou Y; Liu M; Yang J
    Microbiol Res; 2022 Jul; 260():127023. PubMed ID: 35430490
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics.
    Churcheward B; Millet M; Bihouée A; Fertin G; Chaffron S
    mSystems; 2022 Aug; 7(4):e0043222. PubMed ID: 35703559
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
    Mallawaarachchi V; Lin Y
    J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Adversarial and variational autoencoders improve metagenomic binning.
    Líndez PP; Johansen J; Kutuzova S; Sigurdsson AI; Nissen JN; Rasmussen S
    Commun Biol; 2023 Oct; 6(1):1073. PubMed ID: 37865678
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improved metagenome binning and assembly using deep variational autoencoders.
    Nissen JN; Johansen J; Allesøe RL; Sønderby CK; Armenteros JJA; Grønbech CH; Jensen LJ; Nielsen HB; Petersen TN; Winther O; Rasmussen S
    Nat Biotechnol; 2021 May; 39(5):555-560. PubMed ID: 33398153
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.
    Broeksema B; Calusinska M; McGee F; Winter K; Bongiovanni F; Goux X; Wilmes P; Delfosse P; Ghoniem M
    BMC Bioinformatics; 2017 May; 18(1):233. PubMed ID: 28464793
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.