146 related articles for article (PubMed ID: 38470252)
1. A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria.
Sullivan GJ; Barquist L; Cain AK
mSystems; 2024 Apr; 9(4):e0066523. PubMed ID: 38470252
[TBL] [Abstract][Full Text] [Related]
2. The Landscape of Phenotypic and Transcriptional Responses to Ciprofloxacin in Acinetobacter baumannii: Acquired Resistance Alleles Modulate Drug-Induced SOS Response and Prophage Replication.
Geisinger E; Vargas-Cuebas G; Mortman NJ; Syal S; Dai Y; Wainwright EL; Lazinski D; Wood S; Zhu Z; Anthony J; van Opijnen T; Isberg RR
mBio; 2019 Jun; 10(3):. PubMed ID: 31186328
[TBL] [Abstract][Full Text] [Related]
3. Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing.
Baslan T; Kendall J; Volyanskyy K; McNamara K; Cox H; D'Italia S; Ambrosio F; Riggs M; Rodgers L; Leotta A; Song J; Mao Y; Wu J; Shah R; Gularte-Mérida R; Chadalavada K; Nanjangud G; Varadan V; Gordon A; Curtis C; Krasnitz A; Dimitrova N; Harris L; Wigler M; Hicks J
Elife; 2020 May; 9():. PubMed ID: 32401198
[TBL] [Abstract][Full Text] [Related]
4. Antibiotic susceptibility and genomic analysis of ciprofloxacin-resistant and ESBLs-producing Escherichia coli in vegetables and their irrigation water and growing soil.
Sun J; Dai J; Chen J; He Y; Su L; Gong M; Cao M; Wei K; You Y; Liu L; Bai L; Cui S; Chen J; Yang B
Int J Food Microbiol; 2024 Apr; 414():110629. PubMed ID: 38368793
[TBL] [Abstract][Full Text] [Related]
5. De Novo Characterization of Genes That Contribute to High-Level Ciprofloxacin Resistance in Escherichia coli.
Tran T; Ran Q; Ostrer L; Khodursky A
Antimicrob Agents Chemother; 2016 Oct; 60(10):6353-5. PubMed ID: 27431218
[TBL] [Abstract][Full Text] [Related]
6. A randomized approach to speed up the analysis of large-scale read-count data in the application of CNV detection.
Wang W; Sun W; Wang W; Szatkiewicz J
BMC Bioinformatics; 2018 Mar; 19(1):74. PubMed ID: 29490610
[TBL] [Abstract][Full Text] [Related]
7. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
[TBL] [Abstract][Full Text] [Related]
8. Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens.
Zlamal JE; Leyn SA; Iyer M; Elane ML; Wong NA; Wamsley JW; Vercruysse M; Garcia-Alcalde F; Osterman AL
mBio; 2021 Jun; 12(3):e0098721. PubMed ID: 34154405
[TBL] [Abstract][Full Text] [Related]
9. An IS-mediated, RecA-dependent, bet-hedging strategy in
Lowrey LC; Kent LA; Rios BM; Ocasio AB; Cotter PA
Elife; 2023 Jan; 12():. PubMed ID: 36715687
[TBL] [Abstract][Full Text] [Related]
10. Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20.
Kuehl JV; Price MN; Ray J; Wetmore KM; Esquivel Z; Kazakov AE; Nguyen M; Kuehn R; Davis RW; Hazen TC; Arkin AP; Deutschbauer A
mBio; 2014 May; 5(3):e01041-14. PubMed ID: 24865553
[TBL] [Abstract][Full Text] [Related]
11. Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale.
Zlitni S; Bishara A; Moss EL; Tkachenko E; Kang JB; Culver RN; Andermann TM; Weng Z; Wood C; Handy C; Ji HP; Batzoglou S; Bhatt AS
Genome Med; 2020 May; 12(1):50. PubMed ID: 32471482
[TBL] [Abstract][Full Text] [Related]
12. Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines.
Khalil AIS; Muzaki SRBM; Chattopadhyay A; Sanyal A
BMC Bioinformatics; 2020 Nov; 21(1):506. PubMed ID: 33160308
[TBL] [Abstract][Full Text] [Related]
13. Multidrug Intrinsic Resistance Factors in Staphylococcus aureus Identified by Profiling Fitness within High-Diversity Transposon Libraries.
Rajagopal M; Martin MJ; Santiago M; Lee W; Kos VN; Meredith T; Gilmore MS; Walker S
mBio; 2016 Aug; 7(4):. PubMed ID: 27531908
[TBL] [Abstract][Full Text] [Related]
14. Single-cell multi-omics sequencing reveals chromosome copy number inconsistency between trophectoderm and inner cell mass in human reconstituted embryos after spindle transfer.
Zhong W; Shen K; Xue X; Wang W; Wang W; Zuo H; Guo Y; Yao S; Sun M; Song C; Wang Q; Ruan Z; Yao X; Shang W
Hum Reprod; 2023 Nov; 38(11):2137-2153. PubMed ID: 37766497
[TBL] [Abstract][Full Text] [Related]
15. Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic.
Greer SU; Botello J; Hongo D; Levy B; Shah P; Rabinowitz M; Miller DE; Im K; Kumar A
J Transl Med; 2023 Jun; 21(1):378. PubMed ID: 37301971
[TBL] [Abstract][Full Text] [Related]
16. ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.
Zomer A; Burghout P; Bootsma HJ; Hermans PW; van Hijum SA
PLoS One; 2012; 7(8):e43012. PubMed ID: 22900082
[TBL] [Abstract][Full Text] [Related]
17. Plasmid copy number and
Gulyás D; Kocsis B; Szabó D
Acta Microbiol Immunol Hung; 2019 Jun; 66(2):169-178. PubMed ID: 30465448
[TBL] [Abstract][Full Text] [Related]
18. Erratum: High-Throughput Identification of Resistance to Pseudomonas syringae pv. Tomato in Tomato using Seedling Flood Assay.
J Vis Exp; 2023 Oct; (200):. PubMed ID: 37851522
[TBL] [Abstract][Full Text] [Related]
19. Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data.
Favero F; Joshi T; Marquard AM; Birkbak NJ; Krzystanek M; Li Q; Szallasi Z; Eklund AC
Ann Oncol; 2015 Jan; 26(1):64-70. PubMed ID: 25319062
[TBL] [Abstract][Full Text] [Related]
20. seqCNA: an R package for DNA copy number analysis in cancer using high-throughput sequencing.
Mosen-Ansorena D; Telleria N; Veganzones S; De la Orden V; Maestro ML; Aransay AM
BMC Genomics; 2014 Mar; 15(1):178. PubMed ID: 24597965
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
