BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 38478628)

  • 1. Genome-wide repeat landscapes in cancer and cell-free DNA.
    Annapragada AV; Niknafs N; White JR; Bruhm DC; Cherry C; Medina JE; Adleff V; Hruban C; Mathios D; Foda ZH; Phallen J; Scharpf RB; Velculescu VE
    Sci Transl Med; 2024 Mar; 16(738):eadj9283. PubMed ID: 38478628
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-wide discovery and validation of diagnostic DNA methylation-based biomarkers for hepatocellular cancer detection in circulating cell free DNA.
    Hlady RA; Zhao X; Pan X; Yang JD; Ahmed F; Antwi SO; Giama NH; Patel T; Roberts LR; Liu C; Robertson KD
    Theranostics; 2019; 9(24):7239-7250. PubMed ID: 31695765
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hypomethylation in HBV integration regions aids non-invasive surveillance to hepatocellular carcinoma by low-pass genome-wide bisulfite sequencing.
    Zhang H; Dong P; Guo S; Tao C; Chen W; Zhao W; Wang J; Cheung R; Villanueva A; Fan J; Ding H; Schrodi SJ; Zhang D; Zeng C
    BMC Med; 2020 Aug; 18(1):200. PubMed ID: 32741373
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola.
    Dhillon B; Gill N; Hamelin RC; Goodwin SB
    BMC Genomics; 2014 Dec; 15(1):1132. PubMed ID: 25519841
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multidimensional fragmentomic profiling of cell-free DNA released from patient-derived organoids.
    Kim J; Hong SP; Lee S; Lee W; Lee D; Kim R; Park YJ; Moon S; Park K; Cha B; Kim JI
    Hum Genomics; 2023 Oct; 17(1):96. PubMed ID: 37898819
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Somatic copy number alteration and fragmentation analysis in circulating tumor DNA for cancer screening and treatment monitoring in colorectal cancer patients.
    Hallermayr A; Wohlfrom T; Steinke-Lange V; Benet-Pagès A; Scharf F; Heitzer E; Mansmann U; Haberl C; de Wit M; Vogelsang H; Rentsch M; Holinski-Feder E; Pickl JMA
    J Hematol Oncol; 2022 Sep; 15(1):125. PubMed ID: 36056434
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GREAM: A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species.
    Chandrashekar DS; Dey P; Acharya KK
    PLoS One; 2015; 10(7):e0133647. PubMed ID: 26208093
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comprehensive DNA methylation analysis of tissue of origin of plasma cell-free DNA by methylated CpG tandem amplification and sequencing (MCTA-Seq).
    Liu X; Ren J; Luo N; Guo H; Zheng Y; Li J; Tang F; Wen L; Peng J
    Clin Epigenetics; 2019 Jun; 11(1):93. PubMed ID: 31234922
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CRAG: de novo characterization of cell-free DNA fragmentation hotspots in plasma whole-genome sequencing.
    Zhou X; Zheng H; Fu H; Dillehay McKillip KL; Pinney SM; Liu Y
    Genome Med; 2022 Dec; 14(1):138. PubMed ID: 36482487
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The Landscape of Actionable Genomic Alterations in Cell-Free Circulating Tumor DNA from 21,807 Advanced Cancer Patients.
    Zill OA; Banks KC; Fairclough SR; Mortimer SA; Vowles JV; Mokhtari R; Gandara DR; Mack PC; Odegaard JI; Nagy RJ; Baca AM; Eltoukhy H; Chudova DI; Lanman RB; Talasaz A
    Clin Cancer Res; 2018 Aug; 24(15):3528-3538. PubMed ID: 29776953
    [No Abstract]   [Full Text] [Related]  

  • 11. A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled samples.
    Gallardo-Gómez M; Moran S; Páez de la Cadena M; Martínez-Zorzano VS; Rodríguez-Berrocal FJ; Rodríguez-Girondo M; Esteller M; Cubiella J; Bujanda L; Castells A; Balaguer F; Jover R; De Chiara L
    Clin Epigenetics; 2018; 10():53. PubMed ID: 29686738
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The nature and genomic landscape of repetitive DNA classes in Chrysanthemum nankingense shows recent genomic changes.
    Zhang F; Chen F; Schwarzacher T; Heslop-Harrison JS; Teng N
    Ann Bot; 2023 Feb; 131(1):215-228. PubMed ID: 35639931
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A machine learning approach to optimizing cell-free DNA sequencing panels: with an application to prostate cancer.
    Cario CL; Chen E; Leong L; Emami NC; Lopez K; Tenggara I; Simko JP; Friedlander TW; Li PS; Paris PL; Carroll PR; Witte JS
    BMC Cancer; 2020 Aug; 20(1):820. PubMed ID: 32859160
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 5-Hydroxymethylcytosine signature in circulating cell-free DNA as a potential diagnostic factor for early-stage colorectal cancer and precancerous adenoma.
    Xiao Z; Wu W; Wu C; Li M; Sun F; Zheng L; Liu G; Li X; Yun Z; Tang J; Yu Y; Luo S; Sun W; Feng X; Cheng Q; Tao X; Wu S; Tao J
    Mol Oncol; 2021 Jan; 15(1):138-150. PubMed ID: 33107199
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Urothelial Carcinoma Detection Based on Copy Number Profiles of Urinary Cell-Free DNA by Shallow Whole-Genome Sequencing.
    Ge G; Peng D; Guan B; Zhou Y; Gong Y; Shi Y; Hao X; Xu Z; Qi J; Lu H; Zhang X; Zhan Y; Li Y; Wu Y; Ding G; Shen Q; He Q; Li X; Zhou L; Ci W
    Clin Chem; 2020 Jan; 66(1):188-198. PubMed ID: 31811000
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA.
    Wan N; Weinberg D; Liu TY; Niehaus K; Ariazi EA; Delubac D; Kannan A; White B; Bailey M; Bertin M; Boley N; Bowen D; Cregg J; Drake AM; Ennis R; Fransen S; Gafni E; Hansen L; Liu Y; Otte GL; Pecson J; Rice B; Sanderson GE; Sharma A; St John J; Tang C; Tzou A; Young L; Putcha G; Haque IS
    BMC Cancer; 2019 Aug; 19(1):832. PubMed ID: 31443703
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multidimensional Cell-Free DNA Fragmentomic Assay for Detection of Early-Stage Lung Cancer.
    Wang S; Meng F; Li M; Bao H; Chen X; Zhu M; Liu R; Xu X; Yang S; Wu X; Shao Y; Xu L; Yin R
    Am J Respir Crit Care Med; 2023 May; 207(9):1203-1213. PubMed ID: 36346614
    [No Abstract]   [Full Text] [Related]  

  • 18. High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments.
    Deger T; Boers RG; de Weerd V; Angus L; van der Put MMJ; Boers JB; Azmani Z; van IJcken WFJ; Grünhagen DJ; van Dessel LF; Lolkema MPJK; Verhoef C; Sleijfer S; Martens JWM; Gribnau J; Wilting SM
    Clin Epigenetics; 2021 Oct; 13(1):196. PubMed ID: 34670587
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Generic Repeat Finder: A High-Sensitivity Tool for Genome-Wide De Novo Repeat Detection.
    Shi J; Liang C
    Plant Physiol; 2019 Aug; 180(4):1803-1815. PubMed ID: 31152127
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Single-molecule genome-wide mutation profiles of cell-free DNA for non-invasive detection of cancer.
    Bruhm DC; Mathios D; Foda ZH; Annapragada AV; Medina JE; Adleff V; Chiao EJ; Ferreira L; Cristiano S; White JR; Mazzilli SA; Billatos E; Spira A; Zaidi AH; Mueller J; Kim AK; Anagnostou V; Phallen J; Scharpf RB; Velculescu VE
    Nat Genet; 2023 Aug; 55(8):1301-1310. PubMed ID: 37500728
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.