These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 38486291)

  • 21. Preparation of Non-overlapping Transposable Elements (TEs) Annotation by Interval Tree.
    Kojima S
    Methods Mol Biol; 2022; 2509():353-360. PubMed ID: 35796974
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Comparative analysis of transposable elements provides insights into genome evolution in the genus Camelus.
    Ibrahim MA; Al-Shomrani BM; Simenc M; Alharbi SN; Alqahtani FH; Al-Fageeh MB; Manee MM
    BMC Genomics; 2021 Nov; 22(1):842. PubMed ID: 34800971
    [TBL] [Abstract][Full Text] [Related]  

  • 23. RepetDB: a unified resource for transposable element references.
    Amselem J; Cornut G; Choisne N; Alaux M; Alfama-Depauw F; Jamilloux V; Maumus F; Letellier T; Luyten I; Pommier C; Adam-Blondon AF; Quesneville H
    Mob DNA; 2019; 10():6. PubMed ID: 30719103
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Transposable element finder (TEF): finding active transposable elements from next generation sequencing data.
    Miyao A; Yamanouchi U
    BMC Bioinformatics; 2022 Nov; 23(1):500. PubMed ID: 36418944
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Dynamics and Impacts of Transposable Element Proliferation in the Drosophila nasuta Species Group Radiation.
    Wei KH; Mai D; Chatla K; Bachtrog D
    Mol Biol Evol; 2022 May; 39(5):. PubMed ID: 35485457
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism.
    Liu X; Majid M; Yuan H; Chang H; Zhao L; Nie Y; He L; Liu X; He X; Huang Y
    BMC Biol; 2022 Oct; 20(1):243. PubMed ID: 36307800
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.
    Buisine N; Quesneville H; Colot V
    Genomics; 2008 May; 91(5):467-75. PubMed ID: 18343092
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Inferring transposons activity chronology by TRANScendence - TEs database and de-novo mining tool.
    Startek MP; Nogły J; Gromadka A; Grzebelus D; Gambin A
    BMC Bioinformatics; 2017 Oct; 18(Suppl 12):422. PubMed ID: 29072141
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A new approach for annotation of transposable elements using small RNA mapping.
    El Baidouri M; Kim KD; Abernathy B; Arikit S; Maumus F; Panaud O; Meyers BC; Jackson SA
    Nucleic Acids Res; 2015 Jul; 43(13):e84. PubMed ID: 25813049
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Considering transposable element diversification in de novo annotation approaches.
    Flutre T; Duprat E; Feuillet C; Quesneville H
    PLoS One; 2011 Jan; 6(1):e16526. PubMed ID: 21304975
    [TBL] [Abstract][Full Text] [Related]  

  • 31. An Overview of Best Practices for Transposable Element Identification, Classification, and Annotation in Eukaryotic Genomes.
    Rodriguez F; Arkhipova IR
    Methods Mol Biol; 2023; 2607():1-23. PubMed ID: 36449155
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A Tutorial of EDTA: Extensive De Novo TE Annotator.
    Su W; Ou S; Hufford MB; Peterson T
    Methods Mol Biol; 2021; 2250():55-67. PubMed ID: 33900591
    [TBL] [Abstract][Full Text] [Related]  

  • 33. TE-Tracker: systematic identification of transposition events through whole-genome resequencing.
    Gilly A; Etcheverry M; Madoui MA; Guy J; Quadrana L; Alberti A; Martin A; Heitkam T; Engelen S; Labadie K; Le Pen J; Wincker P; Colot V; Aury JM
    BMC Bioinformatics; 2014 Nov; 15(1):377. PubMed ID: 25408240
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies.
    Zeng L; Kortschak RD; Raison JM; Bertozzi T; Adelson DL
    PLoS One; 2018; 13(3):e0193588. PubMed ID: 29538441
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Transposable elements contribute to dynamic genome content in maize.
    Anderson SN; Stitzer MC; Brohammer AB; Zhou P; Noshay JM; O'Connor CH; Hirsch CD; Ross-Ibarra J; Hirsch CN; Springer NM
    Plant J; 2019 Dec; 100(5):1052-1065. PubMed ID: 31381222
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Identification of transposons near predicted lncRNA and mRNA pools of Prunus mume using an integrative transposable element database constructed from Rosaceae plant genomes.
    Ma K; Zhang Q; Cheng T; Wang J
    Mol Genet Genomics; 2018 Oct; 293(5):1301-1316. PubMed ID: 29804262
    [TBL] [Abstract][Full Text] [Related]  

  • 37. TIR-Learner, a New Ensemble Method for TIR Transposable Element Annotation, Provides Evidence for Abundant New Transposable Elements in the Maize Genome.
    Su W; Gu X; Peterson T
    Mol Plant; 2019 Mar; 12(3):447-460. PubMed ID: 30802553
    [TBL] [Abstract][Full Text] [Related]  

  • 38. T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data.
    Fiston-Lavier AS; Barrón MG; Petrov DA; González J
    Nucleic Acids Res; 2015 Feb; 43(4):e22. PubMed ID: 25510498
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.
    McCoy RC; Taylor RW; Blauwkamp TA; Kelley JL; Kertesz M; Pushkarev D; Petrov DA; Fiston-Lavier AS
    PLoS One; 2014; 9(9):e106689. PubMed ID: 25188499
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes.
    Feschotte C; Keswani U; Ranganathan N; Guibotsy ML; Levine D
    Genome Biol Evol; 2009 Jul; 1():205-20. PubMed ID: 20333191
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.