160 related articles for article (PubMed ID: 38487693)
21. The COMBAT-TB Workbench: Making Powerful Mycobacterium tuberculosis Bioinformatics Accessible.
van Heusden P; Mashologu Z; Lose T; Warren R; Christoffels A
mSphere; 2022 Feb; 7(1):e0099121. PubMed ID: 35138128
[TBL] [Abstract][Full Text] [Related]
22. SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruction with Image-Network-Aided Orientation Assignment.
Xie R; Chen YX; Cai JM; Yang Y; Shen HB
J Chem Inf Model; 2020 May; 60(5):2614-2625. PubMed ID: 31990536
[TBL] [Abstract][Full Text] [Related]
23. SPIM workflow manager for HPC.
Kožusznik J; Bainar P; Klímová J; Krumnikl M; Moravec P; Svatoň V; Tomančák P
Bioinformatics; 2019 Oct; 35(19):3875-3876. PubMed ID: 30799494
[TBL] [Abstract][Full Text] [Related]
24. Live Analysis and Reconstruction of Single-Particle Cryo-Electron Microscopy Data with CryoFLARE.
Schenk AD; Cavadini S; Thomä NH; Genoud C
J Chem Inf Model; 2020 May; 60(5):2561-2569. PubMed ID: 32233514
[TBL] [Abstract][Full Text] [Related]
25. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.
Dufresne Y; Lejzerowicz F; Perret-Gentil LA; Pawlowski J; Cordier T
BMC Bioinformatics; 2019 Feb; 20(1):88. PubMed ID: 30782112
[TBL] [Abstract][Full Text] [Related]
26. PipeVal: light-weight extensible tool for file validation.
Patel Y; Beshlikyan A; Jordan M; Kim G; Holmes A; Yamaguchi TN; Boutros PC
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38341658
[TBL] [Abstract][Full Text] [Related]
27. The TimeStudio Project: An open source scientific workflow system for the behavioral and brain sciences.
Nyström P; Falck-Ytter T; Gredebäck G
Behav Res Methods; 2016 Jun; 48(2):542-52. PubMed ID: 26170051
[TBL] [Abstract][Full Text] [Related]
28. An automated workflow for parallel processing of large multiview SPIM recordings.
Schmied C; Steinbach P; Pietzsch T; Preibisch S; Tomancak P
Bioinformatics; 2016 Apr; 32(7):1112-4. PubMed ID: 26628585
[TBL] [Abstract][Full Text] [Related]
29. Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å.
Turoňová B; Schur FKM; Wan W; Briggs JAG
J Struct Biol; 2017 Sep; 199(3):187-195. PubMed ID: 28743638
[TBL] [Abstract][Full Text] [Related]
30. Single particle analysis integrated with microscopy: a high-throughput approach for reconstructing icosahedral particles.
Yan X; Cardone G; Zhang X; Zhou ZH; Baker TS
J Struct Biol; 2014 Apr; 186(1):8-18. PubMed ID: 24613762
[TBL] [Abstract][Full Text] [Related]
31. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
32. Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs.
Norousi R; Wickles S; Leidig C; Becker T; Schmid VJ; Beckmann R; Tresch A
J Struct Biol; 2013 May; 182(2):59-66. PubMed ID: 23454482
[TBL] [Abstract][Full Text] [Related]
33. EPiK-a Workflow for Electron Tomography in Kepler.
Chen R; Wan X; Altintas I; Wang J; Crawl D; Phan S; Lawrence A; Ellisman M
Procedia Comput Sci; 2014; 20():2295-2305. PubMed ID: 25621086
[TBL] [Abstract][Full Text] [Related]
34. Subtomogram averaging from cryo-electron tomograms.
Leigh KE; Navarro PP; Scaramuzza S; Chen W; Zhang Y; Castaño-Díez D; Kudryashev M
Methods Cell Biol; 2019; 152():217-259. PubMed ID: 31326022
[TBL] [Abstract][Full Text] [Related]
35. Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake.
Thompson LR; Anderson SR; Den Uyl PA; Patin NV; Lim SJ; Sanderson G; Goodwin KD
Gigascience; 2022 Jul; 11():. PubMed ID: 35902092
[TBL] [Abstract][Full Text] [Related]
36. SwarmPS: rapid, semi-automated single particle selection software.
Woolford D; Ericksson G; Rothnagel R; Muller D; Landsberg MJ; Pantelic RS; McDowall A; Pailthorpe B; Young PR; Hankamer B; Banks J
J Struct Biol; 2007 Jan; 157(1):174-88. PubMed ID: 16774837
[TBL] [Abstract][Full Text] [Related]
37.
Grant T; Rohou A; Grigorieff N
Elife; 2018 Mar; 7():. PubMed ID: 29513216
[TBL] [Abstract][Full Text] [Related]
38. FPM app: an open-source MATLAB application for simple and intuitive Fourier ptychographic reconstruction.
Rogalski M; Zdańkowski P; Trusiak M
Bioinformatics; 2021 Oct; 37(20):3695-3696. PubMed ID: 33830197
[TBL] [Abstract][Full Text] [Related]
39. TOMOMAN: a software package for large scale cryo-electron tomography data preprocessing, community data sharing, and collaborative computing.
Khavnekar S; Wan W
bioRxiv; 2024 May; ():. PubMed ID: 38746401
[TBL] [Abstract][Full Text] [Related]
40. Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion.
Maluenda D; Majtner T; Horvath P; Vilas JL; Jiménez-Moreno A; Mota J; Ramírez-Aportela E; Sánchez-García R; Conesa P; Del Caño L; Rancel Y; Fonseca Y; Martínez M; Sharov G; García CA; Strelak D; Melero R; Marabini R; Carazo JM; Sorzano COS
Acta Crystallogr D Struct Biol; 2019 Oct; 75(Pt 10):882-894. PubMed ID: 31588920
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]