These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 38487801)

  • 1. Spaco: A comprehensive tool for coloring spatial data at single-cell resolution.
    Jing Z; Zhu Q; Li L; Xie Y; Wu X; Fang Q; Yang B; Dai B; Xu X; Pan H; Bai Y
    Patterns (N Y); 2024 Mar; 5(3):100915. PubMed ID: 38487801
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Computational solutions for spatial transcriptomics.
    Kleino I; FrolovaitÄ— P; Suomi T; Elo LL
    Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Palo: spatially aware color palette optimization for single-cell and spatial data.
    Hou W; Ji Z
    Bioinformatics; 2022 Jul; 38(14):3654-3656. PubMed ID: 35642896
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reconstructing Spatial Transcriptomics at the Single-cell Resolution with BayesDeep.
    Jiang X; Dong L; Wang S; Wen Z; Chen M; Xu L; Xiao G; Li Q
    bioRxiv; 2023 Dec; ():. PubMed ID: 38106214
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning.
    Chang Y; He F; Wang J; Chen S; Li J; Liu J; Yu Y; Su L; Ma A; Allen C; Lin Y; Sun S; Liu B; Javier Otero J; Chung D; Fu H; Li Z; Xu D; Ma Q
    Comput Struct Biotechnol J; 2022; 20():4600-4617. PubMed ID: 36090815
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Spatially aware self-representation learning for tissue structure characterization and spatial functional genes identification.
    Zhang C; Li X; Huang W; Wang L; Shi Q
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37253698
    [TBL] [Abstract][Full Text] [Related]  

  • 7. EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning.
    Tu JJ; Li HS; Yan H; Zhang XF
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36610709
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Innovative super-resolution in spatial transcriptomics: a transformer model exploiting histology images and spatial gene expression.
    Zhao C; Xu Z; Wang X; Tao S; MacDonald WA; He K; Poholek AC; Chen K; Huang H; Chen W
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38436557
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RatInABox, a toolkit for modelling locomotion and neuronal activity in continuous environments.
    George TM; Rastogi M; de Cothi W; Clopath C; Stachenfeld K; Barry C
    Elife; 2024 Feb; 13():. PubMed ID: 38334473
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Deciphering tissue heterogeneity from spatially resolved transcriptomics by the autoencoder-assisted graph convolutional neural network.
    Li X; Huang W; Xu X; Zhang HY; Shi Q
    Front Genet; 2023; 14():1202409. PubMed ID: 37303949
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Cell clustering for spatial transcriptomics data with graph neural networks.
    Li J; Chen S; Pan X; Yuan Y; Shen HB
    Nat Comput Sci; 2022 Jun; 2(6):399-408. PubMed ID: 38177586
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Hint-Based Image Colorization Based on Hierarchical Vision Transformer.
    Lee S; Jung YJ
    Sensors (Basel); 2022 Sep; 22(19):. PubMed ID: 36236517
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Integrating multi-modal information to detect spatial domains of spatial transcriptomics by graph attention network.
    Huo Y; Guo Y; Wang J; Xue H; Feng Y; Chen W; Li X
    J Genet Genomics; 2023 Sep; 50(9):720-733. PubMed ID: 37356752
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Spatial Transcriptomics Arena (STAr): an Integrated Platform for Spatial Transcriptomics Methodology Research.
    Jiang X; Luo D; Fern Ndez E; Yang J; Li H; Jin KW; Zhan Y; Yao B; Bedi S; Xiao G; Zhan X; Li Q; Xie Y
    bioRxiv; 2023 Mar; ():. PubMed ID: 36945650
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Probabilistic cell/domain-type assignment of spatial transcriptomics data with SpatialAnno.
    Shi X; Yang Y; Ma X; Zhou Y; Guo Z; Wang C; Liu J
    Nucleic Acids Res; 2023 Dec; 51(22):e115. PubMed ID: 37941153
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk.
    Shao X; Li C; Yang H; Lu X; Liao J; Qian J; Wang K; Cheng J; Yang P; Chen H; Xu X; Fan X
    Nat Commun; 2022 Jul; 13(1):4429. PubMed ID: 35908020
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.
    Zhang Y; Miller JA; Park J; Lelieveldt BP; Long B; Abdelaal T; Aevermann BD; Biancalani T; Comiter C; Dzyubachyk O; Eggermont J; Langseth CM; Petukhov V; Scalia G; Vaishnav ED; Zhao Y; Lein ES; Scheuermann RH
    Sci Rep; 2023 Jun; 13(1):9567. PubMed ID: 37311768
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SpaDecon: cell-type deconvolution in spatial transcriptomics with semi-supervised learning.
    Coleman K; Hu J; Schroeder A; Lee EB; Li M
    Commun Biol; 2023 Apr; 6(1):378. PubMed ID: 37029267
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Robust Medical Image Colorization with Spatial Mask-Guided Generative Adversarial Network.
    Zhang Z; Li Y; Shin BS
    Bioengineering (Basel); 2022 Nov; 9(12):. PubMed ID: 36550927
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Spatially contrastive variational autoencoder for deciphering tissue heterogeneity from spatially resolved transcriptomics.
    Hu Y; Xiao K; Yang H; Liu X; Zhang C; Shi Q
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38324623
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.