BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 38490206)

  • 1. Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank.
    Baskaran K; Ploskon E; Tejero R; Yokochi M; Harrus D; Liang Y; Peisach E; Persikova I; Ramelot TA; Sekharan M; Tolchard J; Westbrook JD; Bardiaux B; Schwieters CD; Patwardhan A; Velankar S; Burley SK; Kurisu G; Hoch JC; Montelione GT; Vuister GW; Young JY
    Structure; 2024 Jun; 32(6):824-837.e1. PubMed ID: 38490206
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank.
    Baskaran K; Ploskon E; Tejero R; Yokochi M; Harrus D; Liang Y; Peisach E; Persikova I; Ramelot TA; Sekharan M; Tolchard J; Westbrook JD; Bardiaux B; Schwieters CD; Patwardhan A; Velankar S; Burley SK; Kurisu G; Hoch JC; Montelione GT; Vuister GW; Young JY
    bioRxiv; 2024 Jan; ():. PubMed ID: 38328042
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.
    Burley SK; Berman HM; Kleywegt GJ; Markley JL; Nakamura H; Velankar S
    Methods Mol Biol; 2017; 1607():627-641. PubMed ID: 28573592
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The Protein Data Bank Archive.
    Velankar S; Burley SK; Kurisu G; Hoch JC; Markley JL
    Methods Mol Biol; 2021; 2305():3-21. PubMed ID: 33950382
    [TBL] [Abstract][Full Text] [Related]  

  • 5. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.
    Young JY; Westbrook JD; Feng Z; Sala R; Peisach E; Oldfield TJ; Sen S; Gutmanas A; Armstrong DR; Berrisford JM; Chen L; Chen M; Di Costanzo L; Dimitropoulos D; Gao G; Ghosh S; Gore S; Guranovic V; Hendrickx PMS; Hudson BP; Igarashi R; Ikegawa Y; Kobayashi N; Lawson CL; Liang Y; Mading S; Mak L; Mir MS; Mukhopadhyay A; Patwardhan A; Persikova I; Rinaldi L; Sanz-Garcia E; Sekharan MR; Shao C; Swaminathan GJ; Tan L; Ulrich EL; van Ginkel G; Yamashita R; Yang H; Zhuravleva MA; Quesada M; Kleywegt GJ; Berman HM; Markley JL; Nakamura H; Velankar S; Burley SK
    Structure; 2017 Mar; 25(3):536-545. PubMed ID: 28190782
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures.
    Doreleijers JF; Nederveen AJ; Vranken W; Lin J; Bonvin AM; Kaptein R; Markley JL; Ulrich EL
    J Biomol NMR; 2005 May; 32(1):1-12. PubMed ID: 16041478
    [TBL] [Abstract][Full Text] [Related]  

  • 7. NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.
    Doreleijers JF; Vranken WF; Schulte C; Markley JL; Ulrich EL; Vriend G; Vuister GW
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D519-24. PubMed ID: 22139937
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BioMagResBank (BMRB) as a Resource for Structural Biology.
    Romero PR; Kobayashi N; Wedell JR; Baskaran K; Iwata T; Yokochi M; Maziuk D; Yao H; Fujiwara T; Kurusu G; Ulrich EL; Hoch JC; Markley JL
    Methods Mol Biol; 2020; 2112():187-218. PubMed ID: 32006287
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Recommendations of the wwPDB NMR Validation Task Force.
    Montelione GT; Nilges M; Bax A; Güntert P; Herrmann T; Richardson JS; Schwieters CD; Vranken WF; Vuister GW; Wishart DS; Berman HM; Kleywegt GJ; Markley JL
    Structure; 2013 Sep; 21(9):1563-70. PubMed ID: 24010715
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CING: an integrated residue-based structure validation program suite.
    Doreleijers JF; Sousa da Silva AW; Krieger E; Nabuurs SB; Spronk CA; Stevens TJ; Vranken WF; Vriend G; Vuister GW
    J Biomol NMR; 2012 Nov; 54(3):267-83. PubMed ID: 22986687
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Worldwide Protein Data Bank validation information: usage and trends.
    Smart OS; Horský V; Gore S; Svobodová Vařeková R; Bendová V; Kleywegt GJ; Velankar S
    Acta Crystallogr D Struct Biol; 2018 Mar; 74(Pt 3):237-244. PubMed ID: 29533231
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Quality assessment of protein NMR structures.
    Rosato A; Tejero R; Montelione GT
    Curr Opin Struct Biol; 2013 Oct; 23(5):715-24. PubMed ID: 24060334
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NMR refinement and peptide folding using the GROMACS software.
    Sinelnikova A; Spoel DV
    J Biomol NMR; 2021 May; 75(4-5):143-149. PubMed ID: 33778935
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein structure determination using a Riemannian approach.
    Wei X; Li ZC; Li SJ; Peng XB; Zhao Q
    FEBS Lett; 2020 Mar; 594(6):1036-1051. PubMed ID: 31769509
    [TBL] [Abstract][Full Text] [Related]  

  • 15. BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions.
    Markley JL; Ulrich EL; Berman HM; Henrick K; Nakamura H; Akutsu H
    J Biomol NMR; 2008 Mar; 40(3):153-5. PubMed ID: 18288446
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ensemble modeling of protein disordered states: experimental restraint contributions and validation.
    Marsh JA; Forman-Kay JD
    Proteins; 2012 Feb; 80(2):556-72. PubMed ID: 22095648
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PDBStat: a universal restraint converter and restraint analysis software package for protein NMR.
    Tejero R; Snyder D; Mao B; Aramini JM; Montelione GT
    J Biomol NMR; 2013 Aug; 56(4):337-51. PubMed ID: 23897031
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An overview of tools for the validation of protein NMR structures.
    Vuister GW; Fogh RH; Hendrickx PM; Doreleijers JF; Gutmanas A
    J Biomol NMR; 2014 Apr; 58(4):259-85. PubMed ID: 23877928
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Refinement of NMR structures using implicit solvent and advanced sampling techniques.
    Chen J; Im W; Brooks CL
    J Am Chem Soc; 2004 Dec; 126(49):16038-47. PubMed ID: 15584737
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integrating Non-NMR Distance Restraints to Augment NMR Depiction of Protein Structure and Dynamics.
    Tang C; Gong Z
    J Mol Biol; 2020 Apr; 432(9):2913-2929. PubMed ID: 32044345
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.