These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
138 related articles for article (PubMed ID: 38507015)
41. WebSTR: A Population-wide Database of Short Tandem Repeat Variation in Humans. Lundström OS; Adriaan Verbiest M; Xia F; Jam HZ; Zlobec I; Anisimova M; Gymrek M J Mol Biol; 2023 Oct; 435(20):168260. PubMed ID: 37678708 [TBL] [Abstract][Full Text] [Related]
42. Profiling the genome-wide landscape of tandem repeat expansions. Mousavi N; Shleizer-Burko S; Yanicky R; Gymrek M Nucleic Acids Res; 2019 Sep; 47(15):e90. PubMed ID: 31194863 [TBL] [Abstract][Full Text] [Related]
43. Developmental validation of the MiSeq FGx Forensic Genomics System for Targeted Next Generation Sequencing in Forensic DNA Casework and Database Laboratories. Jäger AC; Alvarez ML; Davis CP; Guzmán E; Han Y; Way L; Walichiewicz P; Silva D; Pham N; Caves G; Bruand J; Schlesinger F; Pond SJK; Varlaro J; Stephens KM; Holt CL Forensic Sci Int Genet; 2017 May; 28():52-70. PubMed ID: 28171784 [TBL] [Abstract][Full Text] [Related]
44. STRIDE-DB: a comprehensive database for exploration of instability and phenotypic relevance of short tandem repeats in the human genome. Uppili B; Faruq M Database (Oxford); 2024 Apr; 2024():. PubMed ID: 38602506 [TBL] [Abstract][Full Text] [Related]
46. ReliableGenome: annotation of genomic regions with high/low variant calling concordance. Popitsch N; ; Schuh A; Taylor JC Bioinformatics; 2017 Jan; 33(2):155-160. PubMed ID: 27605105 [TBL] [Abstract][Full Text] [Related]
47. Investigation of short tandem repeats in major depression using whole-genome sequencing data. Yu C; Baune BT; Wong ML; Licinio J J Affect Disord; 2018 May; 232():305-309. PubMed ID: 29501989 [TBL] [Abstract][Full Text] [Related]
48. Recent advances in the detection of repeat expansions with short-read next-generation sequencing. Bahlo M; Bennett MF; Degorski P; Tankard RM; Delatycki MB; Lockhart PJ F1000Res; 2018; 7():. PubMed ID: 29946432 [TBL] [Abstract][Full Text] [Related]
49. CSN and CAVA: variant annotation tools for rapid, robust next-generation sequencing analysis in the clinical setting. Münz M; Ruark E; Renwick A; Ramsay E; Clarke M; Mahamdallie S; Cloke V; Seal S; Strydom A; Lunter G; Rahman N Genome Med; 2015 Jul; 7(1):76. PubMed ID: 26315209 [TBL] [Abstract][Full Text] [Related]
50. The impact of short tandem repeat variation on gene expression. Fotsing SF; Margoliash J; Wang C; Saini S; Yanicky R; Shleizer-Burko S; Goren A; Gymrek M Nat Genet; 2019 Nov; 51(11):1652-1659. PubMed ID: 31676866 [TBL] [Abstract][Full Text] [Related]
51. Fast and accurate DNASeq variant calling workflow composed of LUSH toolkit. Wang T; Zhang Y; Wang H; Zheng Q; Yang J; Zhang T; Sun G; Liu W; Yin L; He X; You R; Wang C; Liu Z; Liu Z; Wang J; Jin X; He Z Hum Genomics; 2024 Oct; 18(1):114. PubMed ID: 39390620 [TBL] [Abstract][Full Text] [Related]
52. Accuracy of short tandem repeats genotyping tools in whole exome sequencing data. Halman A; Oshlack A F1000Res; 2020; 9():200. PubMed ID: 32665844 [No Abstract] [Full Text] [Related]
53. RSV-GenoScan: An automated pipeline for whole-genome human respiratory syncytial virus (RSV) sequence analysis. Dosbaa A; Guilbaud R; Yusti AF; Ferré VM; Charpentier C; Descamps D; Le Hingrat Q; Coppée R J Virol Methods; 2024 Jun; 327():114938. PubMed ID: 38588779 [TBL] [Abstract][Full Text] [Related]
54. A reference haplotype panel for genome-wide imputation of short tandem repeats. Saini S; Mitra I; Mousavi N; Fotsing SF; Gymrek M Nat Commun; 2018 Oct; 9(1):4397. PubMed ID: 30353011 [TBL] [Abstract][Full Text] [Related]
55. WarpSTR: determining tandem repeat lengths using raw nanopore signals. Sitarčík J; Vinař T; Brejová B; Krampl W; Budiš J; Radvánszky J; Lucká M Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37326967 [TBL] [Abstract][Full Text] [Related]
56. Short tandem repeats in human exons: a target for disease mutations. Madsen BE; Villesen P; Wiuf C BMC Genomics; 2008 Sep; 9():410. PubMed ID: 18789129 [TBL] [Abstract][Full Text] [Related]
57. The GFF3toolkit: QC and Merge Pipeline for Genome Annotation. Chen MM; Lin H; Chiang LM; Childers CP; Poelchau MF Methods Mol Biol; 2019; 1858():75-87. PubMed ID: 30414112 [TBL] [Abstract][Full Text] [Related]
58. Precise annotation of tick mitochondrial genomes reveals multiple copy number variation of short tandem repeats and one transposon-like element. Chen Z; Xuan Y; Liang G; Yang X; Yu Z; Barker SC; Kelava S; Bu W; Liu J; Gao S BMC Genomics; 2020 Jul; 21(1):488. PubMed ID: 32680454 [TBL] [Abstract][Full Text] [Related]
59. A massively parallel strategy for STR marker development, capture, and genotyping. Kistler L; Johnson SM; Irwin MT; Louis EE; Ratan A; Perry GH Nucleic Acids Res; 2017 Sep; 45(15):e142. PubMed ID: 28666376 [TBL] [Abstract][Full Text] [Related]
60. RF: a method for filtering short reads with tandem repeats for genome mapping. Misawa K Genomics; 2013 Jul; 102(1):35-7. PubMed ID: 23542167 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]