176 related articles for article (PubMed ID: 38510173)
1.
Tippani M; Divecha HR; Catallini JL; Kwon SH; Weber LM; Spangler A; Jaffe AE; Hyde TM; Kleinman JE; Hicks SC; Martinowich K; Collado-Torres L; Page SC; Maynard KR
Biol Imaging; 2023; 3():e23. PubMed ID: 38510173
[TBL] [Abstract][Full Text] [Related]
2. spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data.
Pardo B; Spangler A; Weber LM; Page SC; Hicks SC; Jaffe AE; Martinowich K; Maynard KR; Collado-Torres L
BMC Genomics; 2022 Jun; 23(1):434. PubMed ID: 35689177
[TBL] [Abstract][Full Text] [Related]
3. Seamless integration of image and molecular analysis for spatial transcriptomics workflows.
Bergenstråhle J; Larsson L; Lundeberg J
BMC Genomics; 2020 Jul; 21(1):482. PubMed ID: 32664861
[TBL] [Abstract][Full Text] [Related]
4. Region-specific denoising identifies spatial co-expression patterns and intra-tissue heterogeneity in spatially resolved transcriptomics data.
Wang L; Maletic-Savatic M; Liu Z
Nat Commun; 2022 Nov; 13(1):6912. PubMed ID: 36376296
[TBL] [Abstract][Full Text] [Related]
5. Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization.
Larsson L; Franzén L; Ståhl PL; Lundeberg J
Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37846051
[TBL] [Abstract][Full Text] [Related]
6. Enabling automated and reproducible spatially resolved transcriptomics at scale.
Stenbeck L; Taborsak-Lines F; Giacomello S
Heliyon; 2022 Jun; 8(6):e09651. PubMed ID: 35756107
[TBL] [Abstract][Full Text] [Related]
7. Computational solutions for spatial transcriptomics.
Kleino I; Frolovaitė P; Suomi T; Elo LL
Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
[TBL] [Abstract][Full Text] [Related]
8. Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.
Fatemi M; Feng E; Sharma C; Azher Z; Goel T; Ramwala O; Palisoul SM; Barney RE; Perreard L; Kolling FW; Salas LA; Christensen BC; Tsongalis GJ; Vaickus LJ; Levy JJ
J Pathol Inform; 2023; 14():100308. PubMed ID: 37114077
[TBL] [Abstract][Full Text] [Related]
9. Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples.
Domanskyi S; Srivastava A; Kaster J; Li H; Herlyn M; Rubinstein JC; Chuang JH
bioRxiv; 2023 Jul; ():. PubMed ID: 37546876
[TBL] [Abstract][Full Text] [Related]
10. Nextflow pipeline for Visium and H&E data from patient-derived xenograft samples.
Domanskyi S; Srivastava A; Kaster J; Li H; Herlyn M; Rubinstein JC; Chuang JH
Cell Rep Methods; 2024 May; 4(5):100759. PubMed ID: 38626768
[TBL] [Abstract][Full Text] [Related]
11. Statistical and machine learning methods for spatially resolved transcriptomics with histology.
Hu J; Schroeder A; Coleman K; Chen C; Auerbach BJ; Li M
Comput Struct Biotechnol J; 2021; 19():3829-3841. PubMed ID: 34285782
[TBL] [Abstract][Full Text] [Related]
12. SSAM-lite: A Light-Weight Web App for Rapid Analysis of Spatially Resolved Transcriptomics Data.
Tiesmeyer S; Sahay S; Müller-Bötticher N; Eils R; Mackowiak SD; Ishaque N
Front Genet; 2022; 13():785877. PubMed ID: 35295943
[TBL] [Abstract][Full Text] [Related]
13. Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning.
Chang Y; He F; Wang J; Chen S; Li J; Liu J; Yu Y; Su L; Ma A; Allen C; Lin Y; Sun S; Liu B; Javier Otero J; Chung D; Fu H; Li Z; Xu D; Ma Q
Comput Struct Biotechnol J; 2022; 20():4600-4617. PubMed ID: 36090815
[TBL] [Abstract][Full Text] [Related]
14. Reconstructing Spatial Transcriptomics at the Single-cell Resolution with BayesDeep.
Jiang X; Dong L; Wang S; Wen Z; Chen M; Xu L; Xiao G; Li Q
bioRxiv; 2023 Dec; ():. PubMed ID: 38106214
[TBL] [Abstract][Full Text] [Related]
15. Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments.
Sriworarat C; Nguyen A; Eagles NJ; Collado-Torres L; Martinowich K; Maynard KR; Hicks SC
Biol Imaging; 2023; 3():e15. PubMed ID: 38487694
[TBL] [Abstract][Full Text] [Related]
16. Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments.
Sriworarat C; Nguyen A; Eagles NJ; Collado-Torres L; Martinowich K; Maynard KR; Hicks SC
bioRxiv; 2023 Feb; ():. PubMed ID: 36747726
[TBL] [Abstract][Full Text] [Related]
17. SpotSweeper: spatially-aware quality control for spatial transcriptomics.
Totty M; Hicks SC; Guo B
bioRxiv; 2024 Jun; ():. PubMed ID: 38895212
[TBL] [Abstract][Full Text] [Related]
18. Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk.
Shao X; Li C; Yang H; Lu X; Liao J; Qian J; Wang K; Cheng J; Yang P; Chen H; Xu X; Fan X
Nat Commun; 2022 Jul; 13(1):4429. PubMed ID: 35908020
[TBL] [Abstract][Full Text] [Related]
19. Tissue RNA Integrity in Visium Spatial Protocol (Fresh Frozen Samples).
Antico F; Gai M; Arigoni M
Methods Mol Biol; 2023; 2584():191-203. PubMed ID: 36495450
[TBL] [Abstract][Full Text] [Related]
20. Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex.
Maynard KR; Collado-Torres L; Weber LM; Uytingco C; Barry BK; Williams SR; Catallini JL; Tran MN; Besich Z; Tippani M; Chew J; Yin Y; Kleinman JE; Hyde TM; Rao N; Hicks SC; Martinowich K; Jaffe AE
Nat Neurosci; 2021 Mar; 24(3):425-436. PubMed ID: 33558695
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
