177 related articles for article (PubMed ID: 38517699)
21. Assembling multidomain protein structures through analogous global structural alignments.
Zhou X; Hu J; Zhang C; Zhang G; Zhang Y
Proc Natl Acad Sci U S A; 2019 Aug; 116(32):15930-15938. PubMed ID: 31341084
[TBL] [Abstract][Full Text] [Related]
22. Improving the Accuracy of Fitted Atomic Models in Cryo-EM Density Maps of Protein Assemblies Using Evolutionary Information from Aligned Homologous Proteins.
Rakesh R; Srinivasan N
Methods Mol Biol; 2016; 1415():193-209. PubMed ID: 27115634
[TBL] [Abstract][Full Text] [Related]
23. Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM.
Nicholls RA; Tykac M; Kovalevskiy O; Murshudov GN
Acta Crystallogr D Struct Biol; 2018 Jun; 74(Pt 6):492-505. PubMed ID: 29872001
[TBL] [Abstract][Full Text] [Related]
24. Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure Refinement.
Leelananda SP; Lindert S
J Chem Inf Model; 2020 May; 60(5):2522-2532. PubMed ID: 31872764
[TBL] [Abstract][Full Text] [Related]
25. Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination.
Yamamori Y; Tomii K
Int J Mol Sci; 2022 Feb; 23(4):. PubMed ID: 35216093
[TBL] [Abstract][Full Text] [Related]
26. De novo atomic protein structure modeling for cryoEM density maps using 3D transformer and HMM.
Giri N; Cheng J
Nat Commun; 2024 Jun; 15(1):5511. PubMed ID: 38951555
[TBL] [Abstract][Full Text] [Related]
27. CryoREAD: de novo structure modeling for nucleic acids in cryo-EM maps using deep learning.
Wang X; Terashi G; Kihara D
Nat Methods; 2023 Nov; 20(11):1739-1747. PubMed ID: 37783885
[TBL] [Abstract][Full Text] [Related]
28. Cryo-electron microscopy modeling by the molecular dynamics flexible fitting method.
Chan KY; Trabuco LG; Schreiner E; Schulten K
Biopolymers; 2012 Sep; 97(9):678-86. PubMed ID: 22696404
[TBL] [Abstract][Full Text] [Related]
29. Accurate flexible refinement for atomic-level protein structure using cryo-EM density maps and deep learning.
Zhang B; Liu D; Zhang Y; Shen HB; Zhang GJ
Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35152277
[TBL] [Abstract][Full Text] [Related]
30. Automated Modeling and Validation of Protein Complexes in Cryo-EM Maps.
Cragnolini T; Sweeney A; Topf M
Methods Mol Biol; 2021; 2215():189-223. PubMed ID: 33368005
[TBL] [Abstract][Full Text] [Related]
31. Refinement of Atomic Structures Against cryo-EM Maps.
Murshudov GN
Methods Enzymol; 2016; 579():277-305. PubMed ID: 27572731
[TBL] [Abstract][Full Text] [Related]
32. Protein-Protein Modeling Using Cryo-EM Restraints.
Trellet M; van Zundert G; Bonvin AMJJ
Methods Mol Biol; 2020; 2112():145-162. PubMed ID: 32006284
[TBL] [Abstract][Full Text] [Related]
33. Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.
Bouvier G; Bardiaux B; Pellarin R; Rapisarda C; Nilges M
Biomolecules; 2022 Sep; 12(9):. PubMed ID: 36139128
[TBL] [Abstract][Full Text] [Related]
34. Cryo_fit: Democratization of flexible fitting for cryo-EM.
Kim DN; Moriarty NW; Kirmizialtin S; Afonine PV; Poon B; Sobolev OV; Adams PD; Sanbonmatsu K
J Struct Biol; 2019 Oct; 208(1):1-6. PubMed ID: 31279069
[TBL] [Abstract][Full Text] [Related]
35. Three-Dimensional Graph Matching to Identify Secondary Structure Correspondence of Medium-Resolution Cryo-EM Density Maps.
Behkamal B; Naghibzadeh M; Saberi MR; Tehranizadeh ZA; Pagnani A; Al Nasr K
Biomolecules; 2021 Nov; 11(12):. PubMed ID: 34944417
[TBL] [Abstract][Full Text] [Related]
36. Iterative Molecular Dynamics-Rosetta Membrane Protein Structure Refinement Guided by Cryo-EM Densities.
Leelananda SP; Lindert S
J Chem Theory Comput; 2017 Oct; 13(10):5131-5145. PubMed ID: 28949136
[TBL] [Abstract][Full Text] [Related]
37. Applications of the molecular dynamics flexible fitting method.
Trabuco LG; Schreiner E; Gumbart J; Hsin J; Villa E; Schulten K
J Struct Biol; 2011 Mar; 173(3):420-7. PubMed ID: 20932910
[TBL] [Abstract][Full Text] [Related]
38. Symmetry-restrained flexible fitting for symmetric EM maps.
Chan KY; Gumbart J; McGreevy R; Watermeyer JM; Sewell BT; Schulten K
Structure; 2011 Sep; 19(9):1211-8. PubMed ID: 21893283
[TBL] [Abstract][Full Text] [Related]
39. ATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM maps.
de Vries SJ; Zacharias M
PLoS One; 2012; 7(12):e49733. PubMed ID: 23251350
[TBL] [Abstract][Full Text] [Related]
40. Cryo-EM of macromolecular assemblies at near-atomic resolution.
Baker ML; Zhang J; Ludtke SJ; Chiu W
Nat Protoc; 2010 Sep; 5(10):1697-708. PubMed ID: 20885381
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
