These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

621 related articles for article (PubMed ID: 38535831)

  • 1. Computational Approaches to Predict Protein-Protein Interactions in Crowded Cellular Environments.
    Grassmann G; Miotto M; Desantis F; Di Rienzo L; Tartaglia GG; Pastore A; Ruocco G; Monti M; Milanetti E
    Chem Rev; 2024 Apr; 124(7):3932-3977. PubMed ID: 38535831
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
    Foffi G; Pastore A; Piazza F; Temussi PA
    Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Effect of protein-protein interactions and solvent viscosity on the rotational diffusion of proteins in crowded environments.
    Nawrocki G; Karaboga A; Sugita Y; Feig M
    Phys Chem Chem Phys; 2019 Jan; 21(2):876-883. PubMed ID: 30560249
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm.
    Yu I; Mori T; Ando T; Harada R; Jung J; Sugita Y; Feig M
    Elife; 2016 Nov; 5():. PubMed ID: 27801646
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Meaningful interpretation of subdiffusive measurements in living cells (crowded environment) by fluorescence fluctuation microscopy.
    Baumann G; Place RF; Földes-Papp Z
    Curr Pharm Biotechnol; 2010 Aug; 11(5):527-43. PubMed ID: 20553227
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Diffusion of proteins in crowded solutions studied by docking-based modeling.
    Singh A; Kundrotas PJ; Vakser IA
    J Chem Phys; 2024 Sep; 161(9):. PubMed ID: 39225532
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein crowding affects hydration structure and dynamics.
    Harada R; Sugita Y; Feig M
    J Am Chem Soc; 2012 Mar; 134(10):4842-9. PubMed ID: 22352398
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Actin Filament Mechanics and Structure in Crowded Environments.
    Castaneda N; Lee M; Rivera-Jacquez HJ; Marracino RR; Merlino TR; Kang H
    J Phys Chem B; 2019 Apr; 123(13):2770-2779. PubMed ID: 30817154
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Effects of crowding on the diffusivity of membrane adhered particles.
    Liu P; Beltramo PJ
    Soft Matter; 2023 Oct; 19(40):7708-7716. PubMed ID: 37791427
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications.
    Liang Z; Verkhivker GM; Hu G
    Brief Bioinform; 2020 May; 21(3):815-835. PubMed ID: 30911759
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Stochastic off-lattice modeling of molecular self-assembly in crowded environments by Green's function reaction dynamics.
    Lee B; Leduc PR; Schwartz R
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Sep; 78(3 Pt 1):031911. PubMed ID: 18851069
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Optimized OPEP Force Field for Simulation of Crowded Protein Solutions.
    Timr S; Melchionna S; Derreumaux P; Sterpone F
    J Phys Chem B; 2023 Apr; 127(16):3616-3623. PubMed ID: 37071827
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Simulation of subcellular structures.
    Khalid S; Rouse SL
    Curr Opin Struct Biol; 2020 Apr; 61():167-172. PubMed ID: 32006813
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Making Soup: Preparing and Validating Models of the Bacterial Cytoplasm for Molecular Simulation.
    Oliveira Bortot L; Bashardanesh Z; van der Spoel D
    J Chem Inf Model; 2020 Jan; 60(1):322-331. PubMed ID: 31816234
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: dynamics.
    Kinjo AR; Takada S
    Phys Rev E Stat Nonlin Soft Matter Phys; 2002 Nov; 66(5 Pt 1):051902. PubMed ID: 12513518
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Challenges in structural approaches to cell modeling.
    Im W; Liang J; Olson A; Zhou HX; Vajda S; Vakser IA
    J Mol Biol; 2016 Jul; 428(15):2943-64. PubMed ID: 27255863
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein-protein interactions affect alpha helix stability in crowded environments.
    Macdonald B; McCarley S; Noeen S; van Giessen AE
    J Phys Chem B; 2015 Feb; 119(7):2956-67. PubMed ID: 25591002
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Biophysical Principles Emerging from Experiments on Protein-Protein Association and Aggregation.
    Hribar-Lee B; Lukšič M
    Annu Rev Biophys; 2024 Jul; 53(1):1-18. PubMed ID: 37906740
    [TBL] [Abstract][Full Text] [Related]  

  • 19. In-Cell Dynamics: The Next Focus of All-Atom Simulations.
    Samuel Russell PP; Alaeen S; Pogorelov TV
    J Phys Chem B; 2023 Nov; 127(46):9863-9872. PubMed ID: 37793083
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Long dynamics simulations of proteins using atomistic force fields and a continuum representation of solvent effects: calculation of structural and dynamic properties.
    Li X; Hassan SA; Mehler EL
    Proteins; 2005 Aug; 60(3):464-84. PubMed ID: 15959866
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 32.