BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

117 related articles for article (PubMed ID: 38561180)

  • 1. POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy.
    Hölzer M
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38561180
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level.
    Lamkiewicz K; Barf LM; Sachse K; Hölzer M
    Genome Biol; 2024 Jul; 25(1):170. PubMed ID: 38951884
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Tau-typing: a Nextflow pipeline for finding the best phylogenetic markers in the genome for molecular typing of microbial species.
    Seabolt MH; Boddapati AK; Forstedt JJ; Konstantinidis KT
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37417952
    [TBL] [Abstract][Full Text] [Related]  

  • 4. nf-core/nanostring: a pipeline for reproducible NanoString nCounter analysis.
    Peltzer A; Mohr C; Stadermann KB; Zwick M; Schmid R
    Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38212989
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection.
    Hölzer M; Marz M
    Bioinformatics; 2021 May; 37(7):1018-1020. PubMed ID: 32735310
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genus delineation of Chlamydiales by analysis of the percentage of conserved proteins justifies the reunifying of the genera Chlamydia and Chlamydophila into one single genus Chlamydia.
    Pannekoek Y; Qi-Long Q; Zhang YZ; van der Ende A
    Pathog Dis; 2016 Aug; 74(6):. PubMed ID: 27440809
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Geniac: Automatic Configuration GENerator and Installer for nextflow pipelines.
    Allain F; Roméjon J; La Rosa P; Jarlier F; Servant N; Hupé P
    Open Res Eur; 2021; 1():76. PubMed ID: 37645091
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MeRIPseqPipe: an integrated analysis pipeline for MeRIP-seq data based on Nextflow.
    Bao X; Zhu K; Liu X; Chen Z; Luo Z; Zhao Q; Ren J; Zuo Z
    Bioinformatics; 2022 Mar; 38(7):2054-2056. PubMed ID: 35022687
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Large-scale comparative analysis of microbial pan-genomes using PanOCT.
    Inman JM; Sutton GG; Beck E; Brinkac LM; Clarke TH; Fouts DE
    Bioinformatics; 2019 Mar; 35(6):1049-1050. PubMed ID: 30165579
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality.
    Albanese D; Donati C
    F1000Res; 2021; 10():822. PubMed ID: 35136576
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Diamond: a multi-modal DIA mass spectrometry data processing pipeline.
    Li C; Gao M; Yang W; Zhong C; Yu R
    Bioinformatics; 2021 Apr; 37(2):265-267. PubMed ID: 33416868
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Kuura-An automated workflow for analyzing WES and WGS data.
    Jambulingam D; Rathinakannan VS; Heron S; Schleutker J; Fey V
    PLoS One; 2024; 19(1):e0296785. PubMed ID: 38236904
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes.
    Petit RA; Read TD
    mSystems; 2020 Aug; 5(4):. PubMed ID: 32753501
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.
    Xie Z; Tang H
    Bioinformatics; 2017 Nov; 33(21):3340-3347. PubMed ID: 29077810
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Roary: rapid large-scale prokaryote pan genome analysis.
    Page AJ; Cummins CA; Hunt M; Wong VK; Reuter S; Holden MT; Fookes M; Falush D; Keane JA; Parkhill J
    Bioinformatics; 2015 Nov; 31(22):3691-3. PubMed ID: 26198102
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NFTest: automated testing of Nextflow pipelines.
    Patel Y; Zhu C; Yamaguchi TN; Bugh YZ; Tian M; Holmes A; Fitz-Gibbon ST; Boutros PC
    Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38341660
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ICBdocker: a Docker image for proteome annotation and visualization.
    Bordin N; Devos DP
    Bioinformatics; 2018 Nov; 34(22):3937-3938. PubMed ID: 29931249
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GTDB-Tk v2: memory friendly classification with the genome taxonomy database.
    Chaumeil PA; Mussig AJ; Hugenholtz P; Parks DH
    Bioinformatics; 2022 Nov; 38(23):5315-5316. PubMed ID: 36218463
    [TBL] [Abstract][Full Text] [Related]  

  • 19. scalepopgen: Bioinformatic Workflow Resources Implemented in Nextflow for Comprehensive Population Genomic Analyses.
    Upadhyay M; Pogorevc N; Medugorac I
    Mol Biol Evol; 2024 Apr; 41(4):. PubMed ID: 38507648
    [TBL] [Abstract][Full Text] [Related]  

  • 20. VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing.
    Kim K; Park K; Lee S; Baek SH; Lim TH; Kim J; Manavalan B; Song JW; Kim WK
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37129547
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.