185 related articles for article (PubMed ID: 38578734)
1. In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities.
Ficetola GF; Guerrieri A; Cantera I; Bonin A
PLoS One; 2024; 19(4):e0298905. PubMed ID: 38578734
[TBL] [Abstract][Full Text] [Related]
2. A set of nematode rRNA cistron databases and a primer assessment tool to enable more flexible and comprehensive metabarcoding.
Charrier E; Chen R; Thundathil N; Gilleard JS
Mol Ecol Resour; 2024 Jul; 24(5):e13965. PubMed ID: 38733216
[TBL] [Abstract][Full Text] [Related]
3. Characterizing parasitic nematode faunas in faeces and soil using DNA metabarcoding.
Davey ML; Utaaker KS; Fossøy F
Parasit Vectors; 2021 Aug; 14(1):422. PubMed ID: 34419166
[TBL] [Abstract][Full Text] [Related]
4. Unveiling the Biodiversity of Deep-Sea Nematodes through Metabarcoding: Are We Ready to Bypass the Classical Taxonomy?
Dell'Anno A; Carugati L; Corinaldesi C; Riccioni G; Danovaro R
PLoS One; 2015; 10(12):e0144928. PubMed ID: 26701112
[TBL] [Abstract][Full Text] [Related]
5. Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding.
Ficetola GF; Boyer F; Valentini A; Bonin A; Meyer A; Dejean T; Gaboriaud C; Usseglio-Polatera P; Taberlet P
Mol Ecol; 2021 Jul; 30(13):3189-3202. PubMed ID: 32920861
[TBL] [Abstract][Full Text] [Related]
6. Distinct community structures of soil nematodes from three ecologically different sites revealed by high-throughput amplicon sequencing of four 18S ribosomal RNA gene regions.
Kenmotsu H; Ishikawa M; Nitta T; Hirose Y; Eki T
PLoS One; 2021; 16(4):e0249571. PubMed ID: 33857177
[TBL] [Abstract][Full Text] [Related]
7. Faecal metabarcoding provides improved detection and taxonomic resolution for non-invasive monitoring of gastrointestinal nematode parasites in wild moose populations.
Davey ML; Kamenova S; Fossøy F; Solberg EJ; Davidson R; Mysterud A; Rolandsen CM
Parasit Vectors; 2023 Jan; 16(1):19. PubMed ID: 36653864
[TBL] [Abstract][Full Text] [Related]
8. Use of universal primers for the 18S ribosomal RNA gene and whole soil DNAs to reveal the taxonomic structures of soil nematodes by high-throughput amplicon sequencing.
Kenmotsu H; Takabayashi E; Takase A; Hirose Y; Eki T
PLoS One; 2021; 16(11):e0259842. PubMed ID: 34780544
[TBL] [Abstract][Full Text] [Related]
9. Comparing diversity levels in environmental samples: DNA sequence capture and metabarcoding approaches using 18S and COI genes.
Giebner H; Langen K; Bourlat SJ; Kukowka S; Mayer C; Astrin JJ; Misof B; Fonseca VG
Mol Ecol Resour; 2020 Sep; 20(5):1333-1345. PubMed ID: 32462738
[TBL] [Abstract][Full Text] [Related]
10. Taxonomic profiling of individual nematodes isolated from copse soils using deep amplicon sequencing of four distinct regions of the 18S ribosomal RNA gene.
Kenmotsu H; Uchida K; Hirose Y; Eki T
PLoS One; 2020; 15(10):e0240336. PubMed ID: 33027282
[TBL] [Abstract][Full Text] [Related]
11. Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale.
Krehenwinkel H; Pomerantz A; Henderson JB; Kennedy SR; Lim JY; Swamy V; Shoobridge JD; Graham N; Patel NH; Gillespie RG; Prost S
Gigascience; 2019 May; 8(5):. PubMed ID: 30824940
[TBL] [Abstract][Full Text] [Related]
12. New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods.
Marquina D; Andersson AF; Ronquist F
Mol Ecol Resour; 2019 Jan; 19(1):90-104. PubMed ID: 30226026
[TBL] [Abstract][Full Text] [Related]
13. Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil.
Anderson IC; Campbell CD; Prosser JI
Environ Microbiol; 2003 Jan; 5(1):36-47. PubMed ID: 12542711
[TBL] [Abstract][Full Text] [Related]
14. DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers.
Wangensteen OS; Palacín C; Guardiola M; Turon X
PeerJ; 2018; 6():e4705. PubMed ID: 29740514
[TBL] [Abstract][Full Text] [Related]
15. Effect of marker choice and thermal cycling protocol on zooplankton DNA metabarcoding studies.
Clarke LJ; Beard JM; Swadling KM; Deagle BE
Ecol Evol; 2017 Feb; 7(3):873-883. PubMed ID: 28168024
[TBL] [Abstract][Full Text] [Related]
16. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
[TBL] [Abstract][Full Text] [Related]
17. Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias.
Clarke LJ; Soubrier J; Weyrich LS; Cooper A
Mol Ecol Resour; 2014 Nov; 14(6):1160-70. PubMed ID: 24751203
[TBL] [Abstract][Full Text] [Related]
18. Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae.
Gaonkar CC; Piredda R; Minucci C; Mann DG; Montresor M; Sarno D; Kooistra WHCF
PLoS One; 2018; 13(12):e0208929. PubMed ID: 30586452
[TBL] [Abstract][Full Text] [Related]
19. Mitochondrial cytochrome c oxidase subunit I (COI) metabarcoding of Foraminifera communities using taxon-specific primers.
Macher JN; Bloska DM; Holzmann M; Girard EB; Pawlowski J; Renema W
PeerJ; 2022; 10():e13952. PubMed ID: 36093332
[TBL] [Abstract][Full Text] [Related]
20. Assessing the potential of nematode metabarcoding for benthic monitoring of offshore oil platforms.
Pawlowski J; Cermakova K; Cordier T; Frontalini F; Apothéloz-Perret-Gentil L; Merzi T
Sci Total Environ; 2024 Jul; 933():173092. PubMed ID: 38729369
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]