These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

127 related articles for article (PubMed ID: 38585727)

  • 1. Taxonize-gb: A tool for filtering GenBank non-redundant databases based on taxonomy.
    Sarhan MS; Filosi M; Maixner F; Fuchsberger C
    bioRxiv; 2024 Mar; ():. PubMed ID: 38585727
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RESCRIPt: Reproducible sequence taxonomy reference database management.
    Robeson MS; O'Rourke DR; Kaehler BD; Ziemski M; Dillon MR; Foster JT; Bokulich NA
    PLoS Comput Biol; 2021 Nov; 17(11):e1009581. PubMed ID: 34748542
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BCdatabaser: on-the-fly reference database creation for (meta-)barcoding.
    Keller A; Hohlfeld S; Kolter A; Schultz J; Gemeinholzer B; Ankenbrand MJ
    Bioinformatics; 2020 Apr; 36(8):2630-2631. PubMed ID: 31904820
    [TBL] [Abstract][Full Text] [Related]  

  • 4. expam-high-resolution analysis of metagenomes using distance trees.
    Solari SM; Young RB; Marcelino VR; Forster SC
    Bioinformatics; 2022 Oct; 38(20):4814-4816. PubMed ID: 36029242
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PARSID: a Python script for automatic analysis of local BLAST results for a rapid molecular taxonomic identification.
    Piccoli C; Muñoz-Mérida A; Crottini A
    BMC Res Notes; 2024 Jan; 17(1):35. PubMed ID: 38268047
    [TBL] [Abstract][Full Text] [Related]  

  • 6. taxalogue: a toolkit to create comprehensive CO1 reference databases.
    Noll NW; Scherber C; Schäffler L
    PeerJ; 2023; 11():e16253. PubMed ID: 38077427
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GlyGen data model and processing workflow.
    Kahsay R; Vora J; Navelkar R; Mousavi R; Fochtman BC; Holmes X; Pattabiraman N; Ranzinger R; Mahadik R; Williamson T; Kulkarni S; Agarwal G; Martin M; Vasudev P; Garcia L; Edwards N; Zhang W; Natale DA; Ross K; Aoki-Kinoshita KF; Campbell MP; York WS; Mazumder R
    Bioinformatics; 2020 Jun; 36(12):3941-3943. PubMed ID: 32324859
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.
    Ranjan P; Brown CA; Erb-Downward JR; Dickson RP
    Bioinformatics; 2022 Aug; 38(15):3830-3832. PubMed ID: 35695743
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments.
    Ruscheweyh HJ; Milanese A; Paoli L; Karcher N; Clayssen Q; Keller MI; Wirbel J; Bork P; Mende DR; Zeller G; Sunagawa S
    Microbiome; 2022 Dec; 10(1):212. PubMed ID: 36464731
    [TBL] [Abstract][Full Text] [Related]  

  • 10. crabs-A software program to generate curated reference databases for metabarcoding sequencing data.
    Jeunen GJ; Dowle E; Edgecombe J; von Ammon U; Gemmell NJ; Cross H
    Mol Ecol Resour; 2023 Apr; 23(3):725-738. PubMed ID: 36437603
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets.
    Czajkowski MD; Vance DP; Frese SA; Casaburi G
    Bioinformatics; 2019 Jul; 35(13):2318-2319. PubMed ID: 30475995
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sequence database versioning for command line and Galaxy bioinformatics servers.
    Dooley DM; Petkau AJ; Van Domselaar G; Hsiao WW
    Bioinformatics; 2016 Apr; 32(8):1275-7. PubMed ID: 26656932
    [TBL] [Abstract][Full Text] [Related]  

  • 13. PanFP: pangenome-based functional profiles for microbial communities.
    Jun SR; Robeson MS; Hauser LJ; Schadt CW; Gorin AA
    BMC Res Notes; 2015 Sep; 8():479. PubMed ID: 26409790
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
    Gweon HS; Shaw LP; Swann J; De Maio N; AbuOun M; Niehus R; Hubbard ATM; Bowes MJ; Bailey MJ; Peto TEA; Hoosdally SJ; Walker AS; Sebra RP; Crook DW; Anjum MF; Read DS; Stoesser N;
    Environ Microbiome; 2019 Oct; 14(1):7. PubMed ID: 33902704
    [TBL] [Abstract][Full Text] [Related]  

  • 15. orfipy: a fast and flexible tool for extracting ORFs.
    Singh U; Wurtele ES
    Bioinformatics; 2021 Sep; 37(18):3019-3020. PubMed ID: 33576786
    [TBL] [Abstract][Full Text] [Related]  

  • 16. LOCAN: a python library for analyzing single-molecule localization microscopy data.
    Doose S
    Bioinformatics; 2022 Apr; 38(9):2670-2672. PubMed ID: 35298593
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Primerdiffer: a python command-line module for large-scale primer design in haplotype genotyping.
    Ren X; Shao Y; Zhang Y; Ni Y; Bi Y; Li R
    Bioinformatics; 2023 Apr; 39(4):. PubMed ID: 37067484
    [TBL] [Abstract][Full Text] [Related]  

  • 18. EMBL2checklists: A Python package to facilitate the user-friendly submission of plant and fungal DNA barcoding sequences to ENA.
    Gruenstaeudl M; Hartmaring Y
    PLoS One; 2019; 14(1):e0210347. PubMed ID: 30629718
    [TBL] [Abstract][Full Text] [Related]  

  • 19. grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
    Taylor LJ; Abbas A; Bushman FD
    Bioinformatics; 2020 Jun; 36(11):3607-3609. PubMed ID: 32154830
    [TBL] [Abstract][Full Text] [Related]  

  • 20. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.
    Santos JD; Sobral D; Pinheiro M; Isidro J; Bogaardt C; Pinto M; Eusébio R; Santos A; Mamede R; Horton DL; Gomes JP; ; Borges V
    Genome Med; 2024 Apr; 16(1):61. PubMed ID: 38659008
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.