These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
144 related articles for article (PubMed ID: 38589250)
1. Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Ji S; Zhu T; Sethia A; Wang W Genome Res; 2024 May; 34(4):633-641. PubMed ID: 38589250 [TBL] [Abstract][Full Text] [Related]
2. Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples. Ji S; Zhu T; Sethia A; Wang W bioRxiv; 2023 Jul; ():. PubMed ID: 37461467 [TBL] [Abstract][Full Text] [Related]
4. Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data. Karimnezhad A; Palidwor GA; Thavorn K; Stewart DJ; Campbell PA; Lo B; Perkins TJ BMC Med Genomics; 2020 Oct; 13(1):156. PubMed ID: 33059707 [TBL] [Abstract][Full Text] [Related]
5. MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data. Fan Y; Xi L; Hughes DS; Zhang J; Zhang J; Futreal PA; Wheeler DA; Wang W Genome Biol; 2016 Aug; 17(1):178. PubMed ID: 27557938 [TBL] [Abstract][Full Text] [Related]
6. Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. Ellrott K; Bailey MH; Saksena G; Covington KR; Kandoth C; Stewart C; Hess J; Ma S; Chiotti KE; McLellan M; Sofia HJ; Hutter C; Getz G; Wheeler D; Ding L; ; Cell Syst; 2018 Mar; 6(3):271-281.e7. PubMed ID: 29596782 [TBL] [Abstract][Full Text] [Related]
7. Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers. Callari M; Sammut SJ; De Mattos-Arruda L; Bruna A; Rueda OM; Chin SF; Caldas C Genome Med; 2017 Apr; 9(1):35. PubMed ID: 28420412 [TBL] [Abstract][Full Text] [Related]
8. Ensemble-Based Somatic Mutation Calling in Cancer Genomes. Huang W; Guo YA; Chang MM; Skanderup AJ Methods Mol Biol; 2020; 2120():37-46. PubMed ID: 32124310 [TBL] [Abstract][Full Text] [Related]
9. Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data. do Valle ÍF; Giampieri E; Simonetti G; Padella A; Manfrini M; Ferrari A; Papayannidis C; Zironi I; Garonzi M; Bernardi S; Delledonne M; Martinelli G; Remondini D; Castellani G BMC Bioinformatics; 2016 Nov; 17(Suppl 12):341. PubMed ID: 28185561 [TBL] [Abstract][Full Text] [Related]
10. An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data. Shiraishi Y; Sato Y; Chiba K; Okuno Y; Nagata Y; Yoshida K; Shiba N; Hayashi Y; Kume H; Homma Y; Sanada M; Ogawa S; Miyano S Nucleic Acids Res; 2013 Apr; 41(7):e89. PubMed ID: 23471004 [TBL] [Abstract][Full Text] [Related]
12. Halvade somatic: Somatic variant calling with Apache Spark. Decap D; de Schaetzen van Brienen L; Larmuseau M; Costanza P; Herzeel C; Wuyts R; Marchal K; Fostier J Gigascience; 2022 Jan; 11(1):. PubMed ID: 35022699 [TBL] [Abstract][Full Text] [Related]
13. Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms. Arora K; Shah M; Johnson M; Sanghvi R; Shelton J; Nagulapalli K; Oschwald DM; Zody MC; Germer S; Jobanputra V; Carter J; Robine N Sci Rep; 2019 Dec; 9(1):19123. PubMed ID: 31836783 [TBL] [Abstract][Full Text] [Related]
14. Passenger mutations accurately classify human tumors. Salvadores M; Mas-Ponte D; Supek F PLoS Comput Biol; 2019 Apr; 15(4):e1006953. PubMed ID: 30986244 [TBL] [Abstract][Full Text] [Related]
15. Comparison of somatic mutation calling methods in amplicon and whole exome sequence data. Xu H; DiCarlo J; Satya RV; Peng Q; Wang Y BMC Genomics; 2014 Mar; 15():244. PubMed ID: 24678773 [TBL] [Abstract][Full Text] [Related]
16. Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study. Zhao Y; Fang LT; Shen TW; Choudhari S; Talsania K; Chen X; Shetty J; Kriga Y; Tran B; Zhu B; Chen Z; Chen W; Wang C; Jaeger E; Meerzaman D; Lu C; Idler K; Ren L; Zheng Y; Shi L; Petitjean V; Sultan M; Hung T; Peters E; Drabek J; Vojta P; Maestro R; Gasparotto D; Kõks S; Reimann E; Scherer A; Nordlund J; Liljedahl U; Foox J; Mason CE; Xiao C; Hong H; Xiao W Sci Data; 2021 Nov; 8(1):296. PubMed ID: 34753956 [TBL] [Abstract][Full Text] [Related]
17. Strelka2: fast and accurate calling of germline and somatic variants. Kim S; Scheffler K; Halpern AL; Bekritsky MA; Noh E; Källberg M; Chen X; Kim Y; Beyter D; Krusche P; Saunders CT Nat Methods; 2018 Aug; 15(8):591-594. PubMed ID: 30013048 [TBL] [Abstract][Full Text] [Related]
18. Comparing the performance of selected variant callers using synthetic data and genome segmentation. Bian X; Zhu B; Wang M; Hu Y; Chen Q; Nguyen C; Hicks B; Meerzaman D BMC Bioinformatics; 2018 Nov; 19(1):429. PubMed ID: 30453880 [TBL] [Abstract][Full Text] [Related]
19. SeqMule: automated pipeline for analysis of human exome/genome sequencing data. Guo Y; Ding X; Shen Y; Lyon GJ; Wang K Sci Rep; 2015 Sep; 5():14283. PubMed ID: 26381817 [TBL] [Abstract][Full Text] [Related]
20. Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma. Roberts HE; Lopopolo M; Pagnamenta AT; Sharma E; Parkes D; Lonie L; Freeman C; Knight SJL; Lunter G; Dreau H; Lockstone H; Taylor JC; Schuh A; Bowden R; Buck D Sci Rep; 2021 Mar; 11(1):6408. PubMed ID: 33742045 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]