These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
143 related articles for article (PubMed ID: 38597877)
1. pipesnake: generalized software for the assembly and analysis of phylogenomic datasets from conserved genomic loci. Brennan IG; Singhal S; Al Bkhetan Z Bioinformatics; 2024 May; 40(5):. PubMed ID: 38597877 [TBL] [Abstract][Full Text] [Related]
2. PHYLUCE is a software package for the analysis of conserved genomic loci. Faircloth BC Bioinformatics; 2016 Mar; 32(5):786-8. PubMed ID: 26530724 [TBL] [Abstract][Full Text] [Related]
3. Genofunc: genome annotation and identification of genome features for automated pipelining analysis of virus whole genome sequences. Yu X BMC Bioinformatics; 2023 May; 24(1):218. PubMed ID: 37254048 [TBL] [Abstract][Full Text] [Related]
4. The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics. Cornet L; Durieu B; Baert F; D'hooge E; Colignon D; Meunier L; Lupo V; Cleenwerck I; Daniel HM; Rigouts L; Sirjacobs D; Declerck S; Vandamme P; Wilmotte A; Baurain D; Becker P Gigascience; 2022 Dec; 12():. PubMed ID: 37036103 [TBL] [Abstract][Full Text] [Related]
5. Phyx: phylogenetic tools for unix. Brown JW; Walker JF; Smith SA Bioinformatics; 2017 Jun; 33(12):1886-1888. PubMed ID: 28174903 [TBL] [Abstract][Full Text] [Related]
7. PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R. Dornburg A; Fisk JN; Tamagnan J; Townsend JP BMC Evol Biol; 2016 Dec; 16(1):262. PubMed ID: 27905871 [TBL] [Abstract][Full Text] [Related]
8. PhyloMAd: efficient assessment of phylogenomic model adequacy. Duchêne DA; Duchêne S; Ho SYW Bioinformatics; 2018 Jul; 34(13):2300-2301. PubMed ID: 29481585 [TBL] [Abstract][Full Text] [Related]
9. NGSphy: phylogenomic simulation of next-generation sequencing data. Escalona M; Rocha S; Posada D Bioinformatics; 2018 Jul; 34(14):2506-2507. PubMed ID: 29534152 [TBL] [Abstract][Full Text] [Related]
10. ALPHA: a toolkit for Automated Local PHylogenomic Analyses. Elworth RAL; Allen C; Benedict T; Dulworth P; Nakhleh L Bioinformatics; 2018 Aug; 34(16):2848-2850. PubMed ID: 29562324 [TBL] [Abstract][Full Text] [Related]
11. ksrates: positioning whole-genome duplications relative to speciation events in KS distributions. Sensalari C; Maere S; Lohaus R Bioinformatics; 2022 Jan; 38(2):530-532. PubMed ID: 34406368 [TBL] [Abstract][Full Text] [Related]
12. HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching. Bi G; Mao Y; Xing Q; Cao M Genomics; 2018 Jan; 110(1):18-22. PubMed ID: 28780378 [TBL] [Abstract][Full Text] [Related]
13. A New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology. Ballesteros JA; Hormiga G Mol Biol Evol; 2016 Aug; 33(8):2117-34. PubMed ID: 27189539 [TBL] [Abstract][Full Text] [Related]
14. PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics. Schön ME; Eme L; Ettema TJG Bioinformatics; 2020 Mar; 36(6):1718-1724. PubMed ID: 31647547 [TBL] [Abstract][Full Text] [Related]
15. Common workflow language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data. Korhonen PK; Hall RS; Young ND; Gasser RB Gigascience; 2019 Apr; 8(4):. PubMed ID: 30821816 [TBL] [Abstract][Full Text] [Related]
16. Efficient querying of genomic reference databases with gget. Luebbert L; Pachter L Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36610989 [TBL] [Abstract][Full Text] [Related]
17. Compare_Genomes: A Comparative Genomics Workflow to Streamline the Analysis of Evolutionary Divergence Across Eukaryotic Genomes. Paril J; Zare T; Fournier-Level A Curr Protoc; 2023 Aug; 3(8):e876. PubMed ID: 37638775 [TBL] [Abstract][Full Text] [Related]