BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

197 related articles for article (PubMed ID: 38606666)

  • 1. STOPGAP: an open-source package for template matching, subtomogram alignment and classification.
    Wan W; Khavnekar S; Wagner J
    Acta Crystallogr D Struct Biol; 2024 May; 80(Pt 5):336-349. PubMed ID: 38606666
    [TBL] [Abstract][Full Text] [Related]  

  • 2. STOPGAP, an open-source package for template matching, subtomogram alignment, and classification.
    Wan W; Khavnekar S; Wagner J
    bioRxiv; 2023 Dec; ():. PubMed ID: 38187721
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cryo-Electron Tomography and Subtomogram Averaging.
    Wan W; Briggs JA
    Methods Enzymol; 2016; 579():329-67. PubMed ID: 27572733
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Subtomogram averaging from cryo-electron tomograms.
    Leigh KE; Navarro PP; Scaramuzza S; Chen W; Zhang Y; Castaño-Díez D; Kudryashev M
    Methods Cell Biol; 2019; 152():217-259. PubMed ID: 31326022
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms.
    Castaño-Díez D; Kudryashev M; Stahlberg H
    J Struct Biol; 2017 Feb; 197(2):135-144. PubMed ID: 27288866
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging.
    Hagen WJH; Wan W; Briggs JAG
    J Struct Biol; 2017 Feb; 197(2):191-198. PubMed ID: 27313000
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Current data processing strategies for cryo-electron tomography and subtomogram averaging.
    Pyle E; Zanetti G
    Biochem J; 2021 May; 478(10):1827-1845. PubMed ID: 34003255
    [TBL] [Abstract][Full Text] [Related]  

  • 8. emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging.
    Himes BA; Zhang P
    Nat Methods; 2018 Nov; 15(11):955-961. PubMed ID: 30349041
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis.
    Frazier Z; Xu M; Alber F
    Structure; 2017 Jun; 25(6):951-961.e2. PubMed ID: 28552576
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å.
    Turoňová B; Schur FKM; Wan W; Briggs JAG
    J Struct Biol; 2017 Sep; 199(3):187-195. PubMed ID: 28743638
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Cryo-electron Tomography Remote Data Collection and Subtomogram Averaging.
    Sheng Y; Morris K; Radecke J; Zhang P
    J Vis Exp; 2022 Jul; (185):. PubMed ID: 35913165
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PyTom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis.
    Hrabe T; Chen Y; Pfeffer S; Cuellar LK; Mangold AV; Förster F
    J Struct Biol; 2012 May; 178(2):177-88. PubMed ID: 22193517
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION.
    Bharat TA; Scheres SH
    Nat Protoc; 2016 Nov; 11(11):2054-65. PubMed ID: 27685097
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structural analysis of pleomorphic and asymmetric viruses using cryo-electron tomography and subtomogram averaging.
    Obr M; Schur FKM
    Adv Virus Res; 2019; 105():117-159. PubMed ID: 31522703
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Combining high throughput and high quality for cryo-electron microscopy data collection.
    Weis F; Hagen WJH
    Acta Crystallogr D Struct Biol; 2020 Aug; 76(Pt 8):724-728. PubMed ID: 32744254
    [TBL] [Abstract][Full Text] [Related]  

  • 16. High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching.
    Xu M; Beck M; Alber F
    J Struct Biol; 2012 May; 178(2):152-64. PubMed ID: 22420977
    [TBL] [Abstract][Full Text] [Related]  

  • 17. In Situ Studies of Mitochondrial Translation by Cryo-Electron Tomography.
    Englmeier R; Förster F
    Methods Mol Biol; 2021; 2192():243-268. PubMed ID: 33230778
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Compressed sensing for electron cryotomography and high-resolution subtomogram averaging of biological specimens.
    Böhning J; Bharat TAM; Collins SM
    Structure; 2022 Mar; 30(3):408-417.e4. PubMed ID: 35051366
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR.
    Balyschew N; Yushkevich A; Mikirtumov V; Sanchez RM; Sprink T; Kudryashev M
    Nat Commun; 2023 Oct; 14(1):6543. PubMed ID: 37848413
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TomoAlign: A novel approach to correcting sample motion and 3D CTF in CryoET.
    Fernandez JJ; Li S
    J Struct Biol; 2021 Dec; 213(4):107778. PubMed ID: 34416376
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.