These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

256 related articles for article (PubMed ID: 38630447)

  • 1. Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations.
    Zhang Z; Mlýnský V; Krepl M; Šponer J; Stadlbauer P
    J Chem Inf Model; 2024 May; 64(9):3896-3911. PubMed ID: 38630447
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations.
    Stadlbauer P; Mlýnský V; Krepl M; Šponer J
    J Chem Inf Model; 2023 Aug; 63(15):4716-4731. PubMed ID: 37458574
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Stability of Two-Quartet G-Quadruplexes and Their Dimers in Atomistic Simulations.
    Islam B; Stadlbauer P; Vorlíčková M; Mergny JL; Otyepka M; Šponer J
    J Chem Theory Comput; 2020 Jun; 16(6):3447-3463. PubMed ID: 32163706
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Folding of guanine quadruplex molecules-funnel-like mechanism or kinetic partitioning? An overview from MD simulation studies.
    Šponer J; Bussi G; Stadlbauer P; Kührová P; Banáš P; Islam B; Haider S; Neidle S; Otyepka M
    Biochim Biophys Acta Gen Subj; 2017 May; 1861(5 Pt B):1246-1263. PubMed ID: 27979677
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural dynamics of propeller loop: towards folding of RNA G-quadruplex.
    Havrila M; Stadlbauer P; Kührová P; Banáš P; Mergny JL; Otyepka M; Šponer J
    Nucleic Acids Res; 2018 Sep; 46(17):8754-8771. PubMed ID: 30165550
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Force-induced unfolding of human telomeric G-quadruplex: a steered molecular dynamics simulation study.
    Li H; Cao EH; Gisler T
    Biochem Biophys Res Commun; 2009 Jan; 379(1):70-5. PubMed ID: 19073141
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Same fold, different properties: polarizable molecular dynamics simulations of telomeric and TERRA G-quadruplexes.
    Lemkul JA
    Nucleic Acids Res; 2020 Jan; 48(2):561-575. PubMed ID: 31807754
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Differences in Conformational Sampling and Intrinsic Electric Fields Drive Ion Binding in Telomeric and TERRA G-Quadruplexes.
    Polêto MD; Lemkul JA
    J Chem Inf Model; 2023 Nov; 63(21):6851-6862. PubMed ID: 37847037
    [TBL] [Abstract][Full Text] [Related]  

  • 9. G-quadruplex dynamics.
    Harkness RW; Mittermaier AK
    Biochim Biophys Acta Proteins Proteom; 2017 Nov; 1865(11 Pt B):1544-1554. PubMed ID: 28642152
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Effect of Monovalent Ion Parameters on Molecular Dynamics Simulations of G-Quadruplexes.
    Havrila M; Stadlbauer P; Islam B; Otyepka M; Šponer J
    J Chem Theory Comput; 2017 Aug; 13(8):3911-3926. PubMed ID: 28657760
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Can We Execute Reliable MM-PBSA Free Energy Computations of Relative Stabilities of Different Guanine Quadruplex Folds?
    Islam B; Stadlbauer P; Neidle S; Haider S; Sponer J
    J Phys Chem B; 2016 Mar; 120(11):2899-912. PubMed ID: 26918369
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular Dynamics Simulations of the c-kit1 Promoter G-Quadruplex: Importance of Electronic Polarization on Stability and Cooperative Ion Binding.
    Salsbury AM; Lemkul JA
    J Phys Chem B; 2019 Jan; 123(1):148-159. PubMed ID: 30525627
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores.
    Bošković F; Zhu J; Chen K; Keyser UF
    Nano Lett; 2019 Nov; 19(11):7996-8001. PubMed ID: 31577148
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Topological conversion of human telomeric G-quadruplexes from hybrid to parallel form induced by naphthalene diimide ligands.
    Hao X; Wang C; Wang Y; Li C; Hou J; Zhang F; Kang C; Gao L
    Int J Biol Macromol; 2021 Jan; 167():1048-1058. PubMed ID: 33188810
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations reveal the parallel stranded d(GGGA)
    Pokorná P; Mlýnský V; Bussi G; Šponer J; Stadlbauer P
    Int J Biol Macromol; 2024 Mar; 261(Pt 2):129712. PubMed ID: 38286387
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ion Binding Properties and Dynamics of the
    Ratnasinghe BD; Salsbury AM; Lemkul JA
    J Chem Inf Model; 2020 Dec; 60(12):6476-6488. PubMed ID: 33264004
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mechanism of unfolding and relative stabilities of G-quadruplex and I-motif noncanonical DNA structures analyzed in biased molecular dynamics simulations.
    Panczyk T; Wojton P; Wolski P
    Biophys Chem; 2019 Jul; 250():106173. PubMed ID: 31005696
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improving All-Atom Force Field to Accurately Describe DNA G-Quadruplex Loops.
    Kim H; Pak Y
    J Phys Chem B; 2022 Aug; 126(33):6199-6209. PubMed ID: 35951994
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Homopurine guanine-rich sequences in complex with N-methyl mesoporphyrin IX form parallel G-quadruplex dimers and display a unique symmetry tetrad.
    Ye M; Chen EV; Pfeil SH; Martin KN; Atrafi T; Yun S; Martinez Z; Yatsunyk LA
    Bioorg Med Chem; 2023 Jan; 77():117112. PubMed ID: 36508994
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations.
    Stadlbauer P; Trantírek L; Cheatham TE; Koča J; Sponer J
    Biochimie; 2014 Oct; 105():22-35. PubMed ID: 25038568
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.