These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 38641812)

  • 1. Minimum information and guidelines for reporting a multiplexed assay of variant effect.
    Claussnitzer M; Parikh VN; Wagner AH; Arbesfeld JA; Bult CJ; Firth HV; Muffley LA; Nguyen Ba AN; Riehle K; Roth FP; Tabet D; Bolognesi B; Glazer AM; Rubin AF
    Genome Biol; 2024 Apr; 25(1):100. PubMed ID: 38641812
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect.
    Claussnitzer M; Parikh VN; Wagner AH; Arbesfeld JA; Bult CJ; Firth HV; Muffley LA; Nguyen Ba AN; Riehle K; Roth FP; Tabet D; Bolognesi B; Glazer AM; Rubin AF
    ArXiv; 2023 Jun; ():. PubMed ID: 37426450
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect.
    Esposito D; Weile J; Shendure J; Starita LM; Papenfuss AT; Roth FP; Fowler DM; Rubin AF
    Genome Biol; 2019 Nov; 20(1):223. PubMed ID: 31679514
    [TBL] [Abstract][Full Text] [Related]  

  • 4. satmut_utils: a simulation and variant calling package for multiplexed assays of variant effect.
    Hoskins I; Sun S; Cote A; Roth FP; Cenik C
    Genome Biol; 2023 Apr; 24(1):82. PubMed ID: 37081510
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mapping MAVE data for use in human genomics applications.
    Arbesfeld JA; Da EY; Stevenson JS; Kuzma K; Paul A; Farris T; Capodanno BJ; Grindstaff SB; Riehle K; Saraiva-Agostinho N; Safer JF; Milosavljevic A; Foreman J; Firth HV; Hunt SE; Iqbal S; Cline MS; Rubin AF; Wagner AH
    bioRxiv; 2024 Jun; ():. PubMed ID: 38979347
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MAVE-NN: learning genotype-phenotype maps from multiplex assays of variant effect.
    Tareen A; Kooshkbaghi M; Posfai A; Ireland WT; McCandlish DM; Kinney JB
    Genome Biol; 2022 Apr; 23(1):98. PubMed ID: 35428271
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assigning credit where it is due: an information content score to capture the clinical value of multiplexed assays of variant effect.
    Ranola JMO; Horton C; Pesaran T; Fayer S; Starita LM; Shirts BH
    BMC Bioinformatics; 2024 Sep; 25(1):295. PubMed ID: 39243022
    [TBL] [Abstract][Full Text] [Related]  

  • 8. linkedISA: semantic representation of ISA-Tab experimental metadata.
    González-Beltrán A; Maguire E; Sansone SA; Rocca-Serra P
    BMC Bioinformatics; 2014; 15 Suppl 14(Suppl 14):S4. PubMed ID: 25472428
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Machine actionable metadata models.
    Batista D; Gonzalez-Beltran A; Sansone SA; Rocca-Serra P
    Sci Data; 2022 Sep; 9(1):592. PubMed ID: 36180441
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Closing the gap: Systematic integration of multiplexed functional data resolves variants of uncertain significance in BRCA1, TP53, and PTEN.
    Fayer S; Horton C; Dines JN; Rubin AF; Richardson ME; McGoldrick K; Hernandez F; Pesaran T; Karam R; Shirts BH; Fowler DM; Starita LM
    Am J Hum Genet; 2021 Dec; 108(12):2248-2258. PubMed ID: 34793697
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Guide for collecting and reporting metadata on protocol variables and parameters from slide-based histotechnology assays to enhance reproducibility.
    Chiriboga L; Callis GM; Wang Y; Chlipala E
    J Histotechnol; 2022 Dec; 45(4):132-147. PubMed ID: 36317862
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Assigning credit where it's due: An information content score to capture the clinical value of Multiplexed Assays of Variant Effect.
    Ranola JMO; Horton C; Pesaran T; Fayer S; Starita LM; Shirts BH
    bioRxiv; 2023 Oct; ():. PubMed ID: 37905042
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The BMS-LM ontology for biomedical data reporting throughout the lifecycle of a research study: From data model to ontology.
    Raboudi A; Allanic M; Balvay D; Hervé PY; Viel T; Yoganathan T; Certain A; Hilbey J; Charlet J; Durupt A; Boutinaud P; Eynard B; Tavitian B
    J Biomed Inform; 2022 Mar; 127():104007. PubMed ID: 35124236
    [TBL] [Abstract][Full Text] [Related]  

  • 14. "METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive".
    Quiñones M; Liou DT; Shyu C; Kim W; Vujkovic-Cvijin I; Belkaid Y; Hurt DE
    BMC Bioinformatics; 2020 Sep; 21(1):378. PubMed ID: 32883210
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Digital research data: from analysis of existing standards to a scientific foundation for a modular metadata schema in nanosafety.
    Elberskirch L; Binder K; Riefler N; Sofranko A; Liebing J; Minella CB; Mädler L; Razum M; van Thriel C; Unfried K; Schins RPF; Kraegeloh A
    Part Fibre Toxicol; 2022 Jan; 19(1):1. PubMed ID: 34983569
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Integrated multiplexed assays of variant effect reveal
    Hoskins I; Rao S; Tante C; Cenik C
    bioRxiv; 2023 Nov; ():. PubMed ID: 38014045
    [TBL] [Abstract][Full Text] [Related]  

  • 17. OMeta: an ontology-based, data-driven metadata tracking system.
    Singh I; Kuscuoglu M; Harkins DM; Sutton G; Fouts DE; Nelson KE
    BMC Bioinformatics; 2019 Jan; 20(1):8. PubMed ID: 30612540
    [TBL] [Abstract][Full Text] [Related]  

  • 18. mutscan-a flexible R package for efficient end-to-end analysis of multiplexed assays of variant effect data.
    Soneson C; Bendel AM; Diss G; Stadler MB
    Genome Biol; 2023 Jun; 24(1):132. PubMed ID: 37264470
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Obstacles to the reuse of study metadata in ClinicalTrials.gov.
    Miron L; Gonçalves RS; Musen MA
    Sci Data; 2020 Dec; 7(1):443. PubMed ID: 33339830
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integrated multiplexed assays of variant effect reveal determinants of catechol-O-methyltransferase gene expression.
    Hoskins I; Rao S; Tante C; Cenik C
    Mol Syst Biol; 2024 May; 20(5):481-505. PubMed ID: 38355921
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.