BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

239 related articles for article (PubMed ID: 38643080)

  • 1. TEC-miTarget: enhancing microRNA target prediction based on deep learning of ribonucleic acid sequences.
    Yang T; Wang Y; He Y
    BMC Bioinformatics; 2024 Apr; 25(1):159. PubMed ID: 38643080
    [TBL] [Abstract][Full Text] [Related]  

  • 2. miTAR: a hybrid deep learning-based approach for predicting miRNA targets.
    Gu T; Zhao X; Barbazuk WB; Lee JH
    BMC Bioinformatics; 2021 Feb; 22(1):96. PubMed ID: 33639834
    [TBL] [Abstract][Full Text] [Related]  

  • 3. miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts.
    Pla A; Zhong X; Rayner S
    PLoS Comput Biol; 2018 Jul; 14(7):e1006185. PubMed ID: 30005074
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TargetNet: functional microRNA target prediction with deep neural networks.
    Min S; Lee B; Yoon S
    Bioinformatics; 2022 Jan; 38(3):671-677. PubMed ID: 34677573
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TargetSpy: a supervised machine learning approach for microRNA target prediction.
    Sturm M; Hackenberg M; Langenberger D; Frishman D
    BMC Bioinformatics; 2010 May; 11():292. PubMed ID: 20509939
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TransPhos: A Deep-Learning Model for General Phosphorylation Site Prediction Based on Transformer-Encoder Architecture.
    Wang X; Zhang Z; Zhang C; Meng X; Shi X; Qu P
    Int J Mol Sci; 2022 Apr; 23(8):. PubMed ID: 35457080
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BoT-Net: a lightweight bag of tricks-based neural network for efficient LncRNA-miRNA interaction prediction.
    Asim MN; Ibrahim MA; Zehe C; Trygg J; Dengel A; Ahmed S
    Interdiscip Sci; 2022 Dec; 14(4):841-862. PubMed ID: 35947255
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DeepSTF: predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape.
    Ding P; Wang Y; Zhang X; Gao X; Liu G; Yu B
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37328639
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accurate prediction of human miRNA targets via graph modeling of the miRNA-target duplex.
    Mohebbi M; Ding L; Malmberg RL; Momany C; Rasheed K; Cai L
    J Bioinform Comput Biol; 2018 Aug; 16(4):1850013. PubMed ID: 30012015
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Deep neural networks for human microRNA precursor detection.
    Zheng X; Fu X; Wang K; Wang M
    BMC Bioinformatics; 2020 Jan; 21(1):17. PubMed ID: 31931701
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identifying microRNA targets in different gene regions.
    Xu W; San Lucas A; Wang Z; Liu Y
    BMC Bioinformatics; 2014; 15 Suppl 7(Suppl 7):S4. PubMed ID: 25077573
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GraphTar: applying word2vec and graph neural networks to miRNA target prediction.
    Przybyszewski J; Malawski M; LichoĊ‚ai S
    BMC Bioinformatics; 2023 Nov; 24(1):436. PubMed ID: 37978418
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network.
    Zhao Z; Woloszynek S; Agbavor F; Mell JC; Sokhansanj BA; Rosen GL
    PLoS Comput Biol; 2021 Sep; 17(9):e1009345. PubMed ID: 34550967
    [TBL] [Abstract][Full Text] [Related]  

  • 14. HN-PPISP: a hybrid network based on MLP-Mixer for protein-protein interaction site prediction.
    Kang Y; Xu Y; Wang X; Pu B; Yang X; Rao Y; Chen J
    Brief Bioinform; 2023 Jan; 24(1):. PubMed ID: 36403092
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MicroRNA target prediction using thermodynamic and sequence curves.
    Ghoshal A; Shankar R; Bagchi S; Grama A; Chaterji S
    BMC Genomics; 2015 Nov; 16():999. PubMed ID: 26608597
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Predicting protein-ligand binding residues with deep convolutional neural networks.
    Cui Y; Dong Q; Hong D; Wang X
    BMC Bioinformatics; 2019 Feb; 20(1):93. PubMed ID: 30808287
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MicroTarget: MicroRNA target gene prediction approach with application to breast cancer.
    Torkey H; Heath LS; ElHefnawi M
    J Bioinform Comput Biol; 2017 Aug; 15(4):1750013. PubMed ID: 28552033
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Predicting MicroRNA Sequence Using CNN and LSTM Stacked in Seq2Seq Architecture.
    Chakraborty R; Hasija Y
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(6):2183-2188. PubMed ID: 31443043
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Contextual encoder-decoder network for visual saliency prediction.
    Kroner A; Senden M; Driessens K; Goebel R
    Neural Netw; 2020 Sep; 129():261-270. PubMed ID: 32563023
    [TBL] [Abstract][Full Text] [Related]  

  • 20. miTarget: microRNA target gene prediction using a support vector machine.
    Kim SK; Nam JW; Rhee JK; Lee WJ; Zhang BT
    BMC Bioinformatics; 2006 Sep; 7():411. PubMed ID: 16978421
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.