These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

154 related articles for article (PubMed ID: 38644496)

  • 1. Fast and accurate variant identification tool for sequencing-based studies.
    Gaston JM; Alm EJ; Zhang AN
    BMC Biol; 2024 Apr; 22(1):90. PubMed ID: 38644496
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.
    Kockan C; Hach F; Sarrafi I; Bell RH; McConeghy B; Beja K; Haegert A; Wyatt AW; Volik SV; Chi KN; Collins CC; Sahinalp SC
    Bioinformatics; 2017 Jan; 33(1):26-34. PubMed ID: 27531099
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations.
    Sun Z; Bhagwate A; Prodduturi N; Yang P; Kocher JA
    Brief Bioinform; 2017 Nov; 18(6):973-983. PubMed ID: 27473065
    [TBL] [Abstract][Full Text] [Related]  

  • 4. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development.
    Lv Y; Liu Y; Zhao H
    BMC Genomics; 2016 Apr; 17():290. PubMed ID: 27079510
    [TBL] [Abstract][Full Text] [Related]  

  • 5. INDELseek: detection of complex insertions and deletions from next-generation sequencing data.
    Au CH; Leung AY; Kwong A; Chan TL; Ma ES
    BMC Genomics; 2017 Jan; 18(1):16. PubMed ID: 28056804
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data.
    Wang N; Lysenkov V; Orte K; Kairisto V; Aakko J; Khan S; Elo LL
    PLoS Comput Biol; 2022 Feb; 18(2):e1009269. PubMed ID: 35176018
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Amplicon Indel Hunter Is a Novel Bioinformatics Tool to Detect Large Somatic Insertion/Deletion Mutations in Amplicon-Based Next-Generation Sequencing Data.
    Kadri S; Zhen CJ; Wurst MN; Long BC; Jiang ZF; Wang YL; Furtado LV; Segal JP
    J Mol Diagn; 2015 Nov; 17(6):635-43. PubMed ID: 26319364
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Combination of RNA- and exome sequencing: Increasing specificity for identification of somatic point mutations and indels in acute leukaemia.
    Hansen MC; Herborg LL; Hansen M; Roug AS; Hokland P
    Leuk Res; 2016 Dec; 51():27-31. PubMed ID: 27821287
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PySNV for complex intra-host variation detection.
    Li L; Fu H; Ma W; Li M
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38426352
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ABRA: improved coding indel detection via assembly-based realignment.
    Mose LE; Wilkerson MD; Hayes DN; Perou CM; Parker JS
    Bioinformatics; 2014 Oct; 30(19):2813-5. PubMed ID: 24907369
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Vindel: a simple pipeline for checking indel redundancy.
    Li Z; Wu X; He B; Zhang L
    BMC Bioinformatics; 2014 Nov; 15(1):359. PubMed ID: 25407965
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.
    Pattnaik S; Gupta S; Rao AA; Panda B
    BMC Bioinformatics; 2014 Feb; 15():40. PubMed ID: 24495296
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of INDEL Calling Tools with Simulation Data and Real Short-Read Data.
    Li D; Kim W; Wang L; Yoon KA; Park B; Park C; Kong SY; Hwang Y; Baek D; Lee ES; Won S
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(5):1635-1644. PubMed ID: 30004886
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data.
    Kim BY; Park JH; Jo HY; Koo SK; Park MH
    PLoS One; 2017; 12(8):e0182272. PubMed ID: 28792971
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.
    Bansal V; Libiger O
    Bioinformatics; 2011 Aug; 27(15):2047-53. PubMed ID: 21653520
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations.
    Liu Y; Loewer M; Aluru S; Schmidt B
    BMC Syst Biol; 2016 Aug; 10 Suppl 2(Suppl 2):47. PubMed ID: 27489955
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Leveraging known genomic variants to improve detection of variants, especially close-by Indels.
    Vo NS; Phan V
    Bioinformatics; 2018 Sep; 34(17):2918-2926. PubMed ID: 29590294
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNAIndel: discovering somatic coding indels from tumor RNA-Seq data.
    Hagiwara K; Ding L; Edmonson MN; Rice SV; Newman S; Easton J; Dai J; Meshinchi S; Ries RE; Rusch M; Zhang J
    Bioinformatics; 2020 Mar; 36(5):1382-1390. PubMed ID: 31593214
    [TBL] [Abstract][Full Text] [Related]  

  • 19. COVID-19 CG enables SARS-CoV-2 mutation and lineage tracking by locations and dates of interest.
    Chen AT; Altschuler K; Zhan SH; Chan YA; Deverman BE
    Elife; 2021 Feb; 10():. PubMed ID: 33620031
    [TBL] [Abstract][Full Text] [Related]  

  • 20. BCFtools/csq: haplotype-aware variant consequences.
    Danecek P; McCarthy SA
    Bioinformatics; 2017 Jul; 33(13):2037-2039. PubMed ID: 28205675
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.