140 related articles for article (PubMed ID: 38645140)
21. Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data.
Kang EY; Martin LJ; Mangul S; Isvilanonda W; Zou J; Ben-David E; Han B; Lusis AJ; Shifman S; Eskin E
Genetics; 2016 Nov; 204(3):1057-1064. PubMed ID: 27765809
[TBL] [Abstract][Full Text] [Related]
22. Another lesson from unmapped reads: in-depth analysis of RNA-Seq reads from various horse tissues.
Gurgul A; Szmatoła T; Ocłoń E; Jasielczuk I; Semik-Gurgul E; Finno CJ; Petersen JL; Bellone R; Hales EN; Ząbek T; Arent Z; Kotula-Balak M; Bugno-Poniewierska M
J Appl Genet; 2022 Sep; 63(3):571-581. PubMed ID: 35670911
[TBL] [Abstract][Full Text] [Related]
23. IDP-ASE: haplotyping and quantifying allele-specific expression at the gene and gene isoform level by hybrid sequencing.
Deonovic B; Wang Y; Weirather J; Wang XJ; Au KF
Nucleic Acids Res; 2017 Mar; 45(5):e32. PubMed ID: 27899656
[TBL] [Abstract][Full Text] [Related]
24. Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle.
Khansefid M; Pryce JE; Bolormaa S; Chen Y; Millen CA; Chamberlain AJ; Vander Jagt CJ; Goddard ME
BMC Genomics; 2018 Nov; 19(1):793. PubMed ID: 30390624
[TBL] [Abstract][Full Text] [Related]
25. Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels.
Deelen P; Zhernakova DV; de Haan M; van der Sijde M; Bonder MJ; Karjalainen J; van der Velde KJ; Abbott KM; Fu J; Wijmenga C; Sinke RJ; Swertz MA; Franke L
Genome Med; 2015; 7(1):30. PubMed ID: 25954321
[TBL] [Abstract][Full Text] [Related]
26. Investigation of allele-specific expression of genes involved in adipogenesis and lipid metabolism suggests complex regulatory mechanisms of PPARGC1A expression in porcine fat tissues.
Stachowiak M; Szczerbal I; Flisikowski K
BMC Genet; 2018 Nov; 19(1):107. PubMed ID: 30497374
[TBL] [Abstract][Full Text] [Related]
27. Tissue resolved, gene structure refined equine transcriptome.
Mansour TA; Scott EY; Finno CJ; Bellone RR; Mienaltowski MJ; Penedo MC; Ross PJ; Valberg SJ; Murray JD; Brown CT
BMC Genomics; 2017 Jan; 18(1):103. PubMed ID: 28107812
[TBL] [Abstract][Full Text] [Related]
28. Generation of an equine biobank to be used for Functional Annotation of Animal Genomes project.
Burns EN; Bordbari MH; Mienaltowski MJ; Affolter VK; Barro MV; Gianino F; Gianino G; Giulotto E; Kalbfleisch TS; Katzman SA; Lassaline M; Leeb T; Mack M; Müller EJ; MacLeod JN; Ming-Whitfield B; Alanis CR; Raudsepp T; Scott E; Vig S; Zhou H; Petersen JL; Bellone RR; Finno CJ
Anim Genet; 2018 Dec; 49(6):564-570. PubMed ID: 30311254
[TBL] [Abstract][Full Text] [Related]
29. Hemostatic Genes Exhibit a High Degree of Allele-Specific Regulation in Liver.
Olsson Lindvall M; Hansson L; Klasson S; Davila Lopez M; Jern C; Stanne TM
Thromb Haemost; 2019 Jul; 119(7):1072-1083. PubMed ID: 31035302
[TBL] [Abstract][Full Text] [Related]
30. Allele specific binding of histone modifications and a transcription factor does not predict allele specific expression in correlated ChIP-seq peak-exon pairs.
Prowse-Wilkins CP; Wang J; Garner JB; Goddard ME; Chamberlain AJ
Sci Rep; 2023 Sep; 13(1):15596. PubMed ID: 37730913
[TBL] [Abstract][Full Text] [Related]
31. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and
Jehl F; Degalez F; Bernard M; Lecerf F; Lagoutte L; Désert C; Coulée M; Bouchez O; Leroux S; Abasht B; Tixier-Boichard M; Bed'hom B; Burlot T; Gourichon D; Bardou P; Acloque H; Foissac S; Djebali S; Giuffra E; Zerjal T; Pitel F; Klopp C; Lagarrigue S
Front Genet; 2021; 12():655707. PubMed ID: 34262593
[TBL] [Abstract][Full Text] [Related]
32. Investigation of allele specific expression in various tissues of broiler chickens using the detection tool VADT.
Tomlinson MJ; Polson SW; Qiu J; Lake JA; Lee W; Abasht B
Sci Rep; 2021 Feb; 11(1):3968. PubMed ID: 33597613
[TBL] [Abstract][Full Text] [Related]
33. Fully Bayesian analysis of allele-specific RNA-seq data.
Alvarez-Castro I; Niemi J
Math Biosci Eng; 2019 Aug; 16(6):7751-7770. PubMed ID: 31698638
[TBL] [Abstract][Full Text] [Related]
34. ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing.
Fan J; Hu J; Xue C; Zhang H; Susztak K; Reilly MP; Xiao R; Li M
PLoS Genet; 2020 May; 16(5):e1008786. PubMed ID: 32392242
[TBL] [Abstract][Full Text] [Related]
35. Targeted RNA-seq improves efficiency, resolution, and accuracy of allele specific expression for human term placentas.
Wu W; Lovett JL; Shedden K; Strassmann BI; Vincenz C
G3 (Bethesda); 2021 Aug; 11(8):. PubMed ID: 34009305
[TBL] [Abstract][Full Text] [Related]
36. The FAANG Data Portal: Global, Open-Access, "FAIR", and Richly Validated Genotype to Phenotype Data for High-Quality Functional Annotation of Animal Genomes.
Harrison PW; Sokolov A; Nayak A; Fan J; Zerbino D; Cochrane G; Flicek P
Front Genet; 2021; 12():639238. PubMed ID: 34220930
[TBL] [Abstract][Full Text] [Related]
37. Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis.
Shao L; Xing F; Xu C; Zhang Q; Che J; Wang X; Song J; Li X; Xiao J; Chen LL; Ouyang Y; Zhang Q
Proc Natl Acad Sci U S A; 2019 Mar; 116(12):5653-5658. PubMed ID: 30833384
[TBL] [Abstract][Full Text] [Related]
38. Identification of allele-specific alternative mRNA processing via transcriptome sequencing.
Li G; Bahn JH; Lee JH; Peng G; Chen Z; Nelson SF; Xiao X
Nucleic Acids Res; 2012 Jul; 40(13):e104. PubMed ID: 22467206
[TBL] [Abstract][Full Text] [Related]
39. Allele-specific regulatory effects on the pig transcriptome.
Lin Y; Li J; Chen L; Bai J; Zhang J; Wang Y; Liu P; Long K; Ge L; Jin L; Gu Y; Li M
Gigascience; 2022 Dec; 12():. PubMed ID: 37776365
[TBL] [Abstract][Full Text] [Related]
40. Screening of whole genome sequences identified high-impact variants for stallion fertility.
Schrimpf R; Gottschalk M; Metzger J; Martinsson G; Sieme H; Distl O
BMC Genomics; 2016 Apr; 17():288. PubMed ID: 27079378
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
