152 related articles for article (PubMed ID: 38651096)
1. ECMpy 2.0: A Python package for automated construction and analysis of enzyme-constrained models.
Mao Z; Niu J; Zhao J; Huang Y; Wu K; Yun L; Guan J; Yuan Q; Liao X; Wang Z; Ma H
Synth Syst Biotechnol; 2024 Sep; 9(3):494-502. PubMed ID: 38651096
[TBL] [Abstract][Full Text] [Related]
2. ECMpy, a Simplified Workflow for Constructing Enzymatic Constrained Metabolic Network Model.
Mao Z; Zhao X; Yang X; Zhang P; Du J; Yuan Q; Ma H
Biomolecules; 2022 Jan; 12(1):. PubMed ID: 35053213
[TBL] [Abstract][Full Text] [Related]
3. Construction of an enzyme-constrained metabolic network model for Myceliophthora thermophila using machine learning-based k
Wang Y; Mao Z; Dong J; Zhang P; Gao Q; Liu D; Tian C; Ma H
Microb Cell Fact; 2024 May; 23(1):138. PubMed ID: 38750569
[TBL] [Abstract][Full Text] [Related]
4. ecBSU1: A Genome-Scale Enzyme-Constrained Model of
Wu K; Mao Z; Mao Y; Niu J; Cai J; Yuan Q; Yun L; Liao X; Wang Z; Ma H
Microorganisms; 2023 Jan; 11(1):. PubMed ID: 36677469
[TBL] [Abstract][Full Text] [Related]
5. Construction and Analysis of an Enzyme-Constrained Metabolic Model of
Niu J; Mao Z; Mao Y; Wu K; Shi Z; Yuan Q; Cai J; Ma H
Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291707
[TBL] [Abstract][Full Text] [Related]
6. Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0.
Chen Y; Gustafsson J; Tafur Rangel A; Anton M; Domenzain I; Kittikunapong C; Li F; Yuan L; Nielsen J; Kerkhoven EJ
Nat Protoc; 2024 Mar; 19(3):629-667. PubMed ID: 38238583
[TBL] [Abstract][Full Text] [Related]
7. Automatic construction of metabolic models with enzyme constraints.
Bekiaris PS; Klamt S
BMC Bioinformatics; 2020 Jan; 21(1):19. PubMed ID: 31937255
[TBL] [Abstract][Full Text] [Related]
8. StrainDesign: a comprehensive Python package for computational design of metabolic networks.
Schneider P; Bekiaris PS; von Kamp A; Klamt S
Bioinformatics; 2022 Oct; 38(21):4981-4983. PubMed ID: 36111857
[TBL] [Abstract][Full Text] [Related]
9. The nPYc-Toolbox, a Python module for the pre-processing, quality-control and analysis of metabolic profiling datasets.
Sands CJ; Wolfer AM; Correia GDS; Sadawi N; Ahmed A; Jiménez B; Lewis MR; Glen RC; Nicholson JK; Pearce JTM
Bioinformatics; 2019 Dec; 35(24):5359-5360. PubMed ID: 31350543
[TBL] [Abstract][Full Text] [Related]
10. Utility of the Python package Geoweaver_cwl for improving workflow reusability: an illustration with multidisciplinary use cases.
Kale A; Sun Z; Ma X
Earth Sci Inform; 2023; 16(3):2955-2961. PubMed ID: 37636584
[TBL] [Abstract][Full Text] [Related]
11. NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome.
Glöckler M; Dräger A; Mostolizadeh R
Front Bioinform; 2022; 2():827024. PubMed ID: 36304309
[TBL] [Abstract][Full Text] [Related]
12. Enzyme-constrained metabolic model and
Caivano A; van Winden W; Dragone G; Mussatto SI
Comput Struct Biotechnol J; 2023; 21():4634-4646. PubMed ID: 37790242
[TBL] [Abstract][Full Text] [Related]
13. Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.
Medlock GL; Moutinho TJ; Papin JA
PLoS Comput Biol; 2020 Apr; 16(4):e1007847. PubMed ID: 32348298
[TBL] [Abstract][Full Text] [Related]
14. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
15. simpleNomo: A Python Package of Making Nomograms for Visualizable Calculation of Logistic Regression Models.
Hong H; Hong S
Health Data Sci; 2023; 3():0023. PubMed ID: 38487195
[TBL] [Abstract][Full Text] [Related]
16. DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems.
Smith RW; van Rosmalen RP; Martins Dos Santos VAP; Fleck C
BMC Syst Biol; 2018 Jun; 12(1):72. PubMed ID: 29914475
[TBL] [Abstract][Full Text] [Related]
17. PyCoTools: a Python toolbox for COPASI.
Welsh CM; Fullard N; Proctor CJ; Martinez-Guimera A; Isfort RJ; Bascom CC; Tasseff R; Przyborski SA; Shanley DP
Bioinformatics; 2018 Nov; 34(21):3702-3710. PubMed ID: 29790940
[TBL] [Abstract][Full Text] [Related]
18. CobraMod: a pathway-centric curation tool for constraint-based metabolic models.
Camborda S; Weder JN; Töpfer N
Bioinformatics; 2022 Apr; 38(9):2654-2656. PubMed ID: 35201291
[TBL] [Abstract][Full Text] [Related]
19. Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3.
Bredesen-Aa BA; Rehmsmeier M
PLoS One; 2022; 17(9):e0274338. PubMed ID: 36084008
[TBL] [Abstract][Full Text] [Related]
20. PyGenePlexus: a Python package for gene discovery using network-based machine learning.
Mancuso CA; Liu R; Krishnan A
Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36721325
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
