BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 38666436)

  • 21. Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries.
    Pino LK; Just SC; MacCoss MJ; Searle BC
    Mol Cell Proteomics; 2020 Jul; 19(7):1088-1103. PubMed ID: 32312845
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Acquisition and Analysis of DIA-Based Proteomic Data: A Comprehensive Survey in 2023.
    Lou R; Shui W
    Mol Cell Proteomics; 2024 Feb; 23(2):100712. PubMed ID: 38182042
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Investigation of Effects of the Spectral Library on Analysis of diaPASEF Data.
    Wen C; Gan G; Xu X; Lin G; Chen X; Wu Y; Xu Z; Wang J; Xie C; Wang HR; Zhong CQ
    J Proteome Res; 2022 Feb; 21(2):507-518. PubMed ID: 34969243
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results.
    Fernández-Costa C; Martínez-Bartolomé S; McClatchy DB; Saviola AJ; Yu NK; Yates JR
    J Proteome Res; 2020 Aug; 19(8):3153-3161. PubMed ID: 32510229
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A Comparative Analysis of Data Analysis Tools for Data-Independent Acquisition Mass Spectrometry.
    Zhang F; Ge W; Huang L; Li D; Liu L; Dong Z; Xu L; Ding X; Zhang C; Sun Y; A J; Gao J; Guo T
    Mol Cell Proteomics; 2023 Sep; 22(9):100623. PubMed ID: 37481071
    [TBL] [Abstract][Full Text] [Related]  

  • 26. MaxDIA enables library-based and library-free data-independent acquisition proteomics.
    Sinitcyn P; Hamzeiy H; Salinas Soto F; Itzhak D; McCarthy F; Wichmann C; Steger M; Ohmayer U; Distler U; Kaspar-Schoenefeld S; Prianichnikov N; Yılmaz Ş; Rudolph JD; Tenzer S; Perez-Riverol Y; Nagaraj N; Humphrey SJ; Cox J
    Nat Biotechnol; 2021 Dec; 39(12):1563-1573. PubMed ID: 34239088
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform.
    Yu F; Teo GC; Kong AT; Fröhlich K; Li GX; Demichev V; Nesvizhskii AI
    Nat Commun; 2023 Jul; 14(1):4154. PubMed ID: 37438352
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry.
    Barkovits K; Linden A; Galozzi S; Schilde L; Pacharra S; Mollenhauer B; Stoepel N; Steinbach S; May C; Uszkoreit J; Eisenacher M; Marcus K
    J Proteome Res; 2018 Oct; 17(10):3418-3430. PubMed ID: 30207155
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Technical advances in proteomics: new developments in data-independent acquisition.
    Hu A; Noble WS; Wolf-Yadlin A
    F1000Res; 2016; 5():. PubMed ID: 27092249
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data.
    Heil LR; Fondrie WE; McGann CD; Federation AJ; Noble WS; MacCoss MJ; Keich U
    J Proteome Res; 2022 Jun; 21(6):1382-1391. PubMed ID: 35549345
    [TBL] [Abstract][Full Text] [Related]  

  • 31. nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics Workflows.
    Allen C; Meinl R; Paez JS; Searle BC; Just S; Pino LK; Fondrie WE
    J Proteome Res; 2023 Aug; 22(8):2743-2749. PubMed ID: 37417926
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Application of spectral library prediction for parallel reaction monitoring of viral peptides.
    Grossegesse M; Nitsche A; Schaade L; Doellinger J
    Proteomics; 2021 Apr; 21(7-8):e2000226. PubMed ID: 33615696
    [TBL] [Abstract][Full Text] [Related]  

  • 33. DIAproteomics: A Multifunctional Data Analysis Pipeline for Data-Independent Acquisition Proteomics and Peptidomics.
    Bichmann L; Gupta S; Rosenberger G; Kuchenbecker L; Sachsenberg T; Ewels P; Alka O; Pfeuffer J; Kohlbacher O; Röst H
    J Proteome Res; 2021 Jul; 20(7):3758-3766. PubMed ID: 34153189
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.
    Muntel J; Kirkpatrick J; Bruderer R; Huang T; Vitek O; Ori A; Reiter L
    J Proteome Res; 2019 Mar; 18(3):1340-1351. PubMed ID: 30726097
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Benchmarking Bioinformatics Pipelines in Data-Independent Acquisition Mass Spectrometry for Immunopeptidomics.
    Shahbazy M; Ramarathinam SH; Illing PT; Jappe EC; Faridi P; Croft NP; Purcell AW
    Mol Cell Proteomics; 2023 Apr; 22(4):100515. PubMed ID: 36796644
    [TBL] [Abstract][Full Text] [Related]  

  • 36. DaDIA: Hybridizing Data-Dependent and Data-Independent Acquisition Modes for Generating High-Quality Metabolomic Data.
    Guo J; Shen S; Xing S; Huan T
    Anal Chem; 2021 Feb; 93(4):2669-2677. PubMed ID: 33465307
    [TBL] [Abstract][Full Text] [Related]  

  • 37. DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics.
    Midha MK; Campbell DS; Kapil C; Kusebauch U; Hoopmann MR; Bader SL; Moritz RL
    Nat Commun; 2020 Oct; 11(1):5251. PubMed ID: 33067471
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Sample Size-Comparable Spectral Library Enhances Data-Independent Acquisition-Based Proteome Coverage of Low-Input Cells.
    Siyal AA; Chen ES; Chan HJ; Kitata RB; Yang JC; Tu HL; Chen YJ
    Anal Chem; 2021 Dec; 93(51):17003-17011. PubMed ID: 34904835
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics.
    Teleman J; Hauri S; Malmström J
    J Proteome Res; 2017 Jul; 16(7):2384-2392. PubMed ID: 28516777
    [TBL] [Abstract][Full Text] [Related]  

  • 40. PIONEER: Pipeline for Generating High-Quality Spectral Libraries for DIA-MS Data.
    Manda SS; Noor Z; Hains PG; Zhong Q
    Curr Protoc; 2021 Mar; 1(3):e69. PubMed ID: 33656278
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.