These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 38670160)

  • 1. DEGAP: Dynamic elongation of a genome assembly path.
    Huang Y; Wang Z; Schmidt MA; Su H; Xiong L; Zhang J
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38670160
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
    Chu C; Li X; Wu Y
    BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 4. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
    Nurk S; Walenz BP; Rhie A; Vollger MR; Logsdon GA; Grothe R; Miga KH; Eichler EE; Phillippy AM; Koren S
    Genome Res; 2020 Sep; 30(9):1291-1305. PubMed ID: 32801147
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RFfiller: a robust and fast statistical algorithm for gap filling in draft genomes.
    Midekso FD; Yi G
    PeerJ; 2022; 10():e14186. PubMed ID: 36262414
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GapFiller: a de novo assembly approach to fill the gap within paired reads.
    Nadalin F; Vezzi F; Policriti A
    BMC Bioinformatics; 2012; 13 Suppl 14(Suppl 14):S8. PubMed ID: 23095524
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Long amplicon HiFi sequencing for mitochondrial DNA genomes.
    Cai ZF; Hu JY; Yin TT; Wang D; Shen QK; Ma C; Ou DQ; Xu MM; Shi X; Li QL; Wu RN; Ajuma L; Adeola AC; Zhang YP; Peng MS
    Mol Ecol Resour; 2023 Jul; 23(5):1014-1022. PubMed ID: 36756726
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
    Lin HH; Liao YC
    PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome sequence assembly algorithms and misassembly identification methods.
    Meng Y; Lei Y; Gao J; Liu Y; Ma E; Ding Y; Bian Y; Zu H; Dong Y; Zhu X
    Mol Biol Rep; 2022 Nov; 49(11):11133-11148. PubMed ID: 36151399
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
    Boisvert S; Laviolette F; Corbeil J
    J Comput Biol; 2010 Nov; 17(11):1519-33. PubMed ID: 20958248
    [TBL] [Abstract][Full Text] [Related]  

  • 11. GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies.
    Chen E; Chu J; Zhang J; Warren RL; Birol I
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2802-2808. PubMed ID: 34478378
    [TBL] [Abstract][Full Text] [Related]  

  • 12. LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly.
    Xu GC; Xu TJ; Zhu R; Zhang Y; Li SQ; Wang HW; Li JT
    Gigascience; 2019 Jan; 8(1):. PubMed ID: 30576505
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores.
    Meng J; Wang B; Wei Y; Feng S; Balaji P
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S2. PubMed ID: 25253533
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology.
    Ruan J; Jiang L; Chong Z; Gong Q; Li H; Li C; Tao Y; Zheng C; Zhai W; Turissini D; Cannon CH; Lu X; Wu CI
    BMC Genomics; 2013 Oct; 14(1):711. PubMed ID: 24134808
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
    Coombe L; Zhang J; Vandervalk BP; Chu J; Jackman SD; Birol I; Warren RL
    BMC Bioinformatics; 2018 Jun; 19(1):234. PubMed ID: 29925315
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer.
    Peterlongo P; Chikhi R
    BMC Bioinformatics; 2012 Mar; 13():48. PubMed ID: 22443449
    [TBL] [Abstract][Full Text] [Related]  

  • 17. High-quality metagenome assembly from long accurate reads with metaMDBG.
    Benoit G; Raguideau S; James R; Phillippy AM; Chikhi R; Quince C
    Nat Biotechnol; 2024 Sep; 42(9):1378-1383. PubMed ID: 38168989
    [TBL] [Abstract][Full Text] [Related]  

  • 18. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ragout-a reference-assisted assembly tool for bacterial genomes.
    Kolmogorov M; Raney B; Paten B; Pham S
    Bioinformatics; 2014 Jun; 30(12):i302-9. PubMed ID: 24931998
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.
    Kisand V; Lettieri T
    BMC Genomics; 2013 Apr; 14():211. PubMed ID: 23547799
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.