These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. RNA Framework for Assaying the Structure of RNAs by High-Throughput Sequencing. Marinus T; Incarnato D Methods Mol Biol; 2021; 2284():63-76. PubMed ID: 33835438 [TBL] [Abstract][Full Text] [Related]
4. The evolution of RNA structural probing methods: From gels to next-generation sequencing. Mailler E; Paillart JC; Marquet R; Smyth RP; Vivet-Boudou V Wiley Interdiscip Rev RNA; 2019 Mar; 10(2):e1518. PubMed ID: 30485688 [TBL] [Abstract][Full Text] [Related]
5. Simultaneous folding of alternative RNA structures with mutual constraints: an application to next-generation sequencing-based RNA structure probing. Zhong C; Zhang S J Comput Biol; 2014 Aug; 21(8):609-21. PubMed ID: 24689688 [TBL] [Abstract][Full Text] [Related]
6. SHAPE Profiling to Probe Group II Intron Conformational Dynamics During Splicing. Wiryaman T; Toor N Methods Mol Biol; 2021; 2167():171-182. PubMed ID: 32712920 [TBL] [Abstract][Full Text] [Related]
7. Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing. Wan Y; Qu K; Ouyang Z; Chang HY Methods Mol Biol; 2016; 1361():141-60. PubMed ID: 26483021 [TBL] [Abstract][Full Text] [Related]
11. Chemical and Enzymatic Probing of Viral RNAs: From Infancy to Maturity and Beyond. Gilmer O; Quignon E; Jousset AC; Paillart JC; Marquet R; Vivet-Boudou V Viruses; 2021 Sep; 13(10):. PubMed ID: 34696322 [TBL] [Abstract][Full Text] [Related]
12. Differential analysis of RNA structure probing experiments at nucleotide resolution: uncovering regulatory functions of RNA structure. Yu B; Li P; Zhang QC; Hou L Nat Commun; 2022 Jul; 13(1):4227. PubMed ID: 35869080 [TBL] [Abstract][Full Text] [Related]
13. Dawn of the in vivo RNA structurome and interactome. Kwok CK Biochem Soc Trans; 2016 Oct; 44(5):1395-1410. PubMed ID: 27911722 [TBL] [Abstract][Full Text] [Related]
15. Mapping the landscape of RNA dynamics with NMR spectroscopy. Rinnenthal J; Buck J; Ferner J; Wacker A; Fürtig B; Schwalbe H Acc Chem Res; 2011 Dec; 44(12):1292-301. PubMed ID: 21894962 [TBL] [Abstract][Full Text] [Related]
16. Studies of RNA Sequence and Structure Using Nanopores. Henley RY; Carson S; Wanunu M Prog Mol Biol Transl Sci; 2016; 139():73-99. PubMed ID: 26970191 [TBL] [Abstract][Full Text] [Related]
17. Real-time label-free detection of dynamic aptamer-small molecule interactions using a nanopore nucleic acid conformational sensor. Chingarande RG; Tian K; Kuang Y; Sarangee A; Hou C; Ma E; Ren J; Hawkins S; Kim J; Adelstein R; Chen S; Gillis KD; Gu LQ Proc Natl Acad Sci U S A; 2023 Jun; 120(24):e2108118120. PubMed ID: 37276386 [TBL] [Abstract][Full Text] [Related]
18. Determination of isoform-specific RNA structure with nanopore long reads. Aw JGA; Lim SW; Wang JX; Lambert FRP; Tan WT; Shen Y; Zhang Y; Kaewsapsak P; Li C; Ng SB; Vardy LA; Tan MH; Nagarajan N; Wan Y Nat Biotechnol; 2021 Mar; 39(3):336-346. PubMed ID: 33106685 [TBL] [Abstract][Full Text] [Related]