126 related articles for article (PubMed ID: 38683326)
1. iTaxoTools 1.0: Improved DNA Barcode Exploration with TaxI2.
Vences M; Patmanidis S; Fedosov A; Miralles A; Puillandre N
Methods Mol Biol; 2024; 2744():281-296. PubMed ID: 38683326
[TBL] [Abstract][Full Text] [Related]
2. Analysis of DNA Barcodes Using DNA Subway.
Williams J; Nash B; Ghiban C; Khalfan M; Hilgert U; Lauter S; Yang CH; Micklos DA
Methods Mol Biol; 2024; 2744():551-560. PubMed ID: 38683342
[TBL] [Abstract][Full Text] [Related]
3. Species Delimitation and Exploration of Species Partitions with ASAP and LIMES.
Puillandre N; Miralles A; Brouillet S; Fedosov A; Fischell F; Patmanidis S; Vences M
Methods Mol Biol; 2024; 2744():313-334. PubMed ID: 38683328
[TBL] [Abstract][Full Text] [Related]
4. VIP Barcoding: composition vector-based software for rapid species identification based on DNA barcoding.
Fan L; Hui JH; Yu ZG; Chu KH
Mol Ecol Resour; 2014 Jul; 14(4):871-81. PubMed ID: 24479510
[TBL] [Abstract][Full Text] [Related]
5. DNA Barcoding in Species Delimitation: From Genetic Distances to Integrative Taxonomy.
Miralles A; Puillandre N; Vences M
Methods Mol Biol; 2024; 2744():77-104. PubMed ID: 38683312
[TBL] [Abstract][Full Text] [Related]
6. A detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data.
Dubois B; Debode F; Hautier L; Hulin J; Martin GS; Delvaux A; Janssen E; Mingeot D
BMC Genom Data; 2022 Jul; 23(1):53. PubMed ID: 35804326
[TBL] [Abstract][Full Text] [Related]
7. |SE|S|AM|E| Barcode: NGS-oriented software for amplicon characterization--application to species and environmental barcoding.
Piry S; Guivier E; Realini A; Martin JF
Mol Ecol Resour; 2012 Nov; 12(6):1151-7. PubMed ID: 22823139
[TBL] [Abstract][Full Text] [Related]
8. SDT: a virus classification tool based on pairwise sequence alignment and identity calculation.
Muhire BM; Varsani A; Martin DP
PLoS One; 2014; 9(9):e108277. PubMed ID: 25259891
[TBL] [Abstract][Full Text] [Related]
9. One species in eight: DNA barcodes from type specimens resolve a taxonomic quagmire.
Mutanen M; Kekkonen M; Prosser SW; Hebert PD; Kaila L
Mol Ecol Resour; 2015 Jul; 15(4):967-84. PubMed ID: 25524367
[TBL] [Abstract][Full Text] [Related]
10. EMBL2checklists: A Python package to facilitate the user-friendly submission of plant and fungal DNA barcoding sequences to ENA.
Gruenstaeudl M; Hartmaring Y
PLoS One; 2019; 14(1):e0210347. PubMed ID: 30629718
[TBL] [Abstract][Full Text] [Related]
11. DNA Barcode-Based Species Diagnosis with MolD.
Fedosov A; Puillandre N; Fischell F; Patmanidis S; Miralles A; Vences M
Methods Mol Biol; 2024; 2744():297-311. PubMed ID: 38683327
[TBL] [Abstract][Full Text] [Related]
12. funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model.
Meher PK; Sahu TK; Gahoi S; Tomar R; Rao AR
BMC Genet; 2019 Jan; 20(1):2. PubMed ID: 30616524
[TBL] [Abstract][Full Text] [Related]
13. Guidelines for the Analysis of DNA Barcoding/Metabarcoding Sequencing Data and Interpretation of Publicly Available Databases.
Damaso N; Elwick KE; Robertson JM
Methods Mol Biol; 2024; 2744():391-402. PubMed ID: 38683333
[TBL] [Abstract][Full Text] [Related]
14. Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.
Galanti L; Shasha D; Gunsalus KC
BMC Bioinformatics; 2021 Jul; 22(1):359. PubMed ID: 34215187
[TBL] [Abstract][Full Text] [Related]
15. DNA barcoding in plants: evolution and applications of in silico approaches and resources.
Bhargava M; Sharma A
Mol Phylogenet Evol; 2013 Jun; 67(3):631-41. PubMed ID: 23500333
[TBL] [Abstract][Full Text] [Related]
16. ABGD, Automatic Barcode Gap Discovery for primary species delimitation.
Puillandre N; Lambert A; Brouillet S; Achaz G
Mol Ecol; 2012 Apr; 21(8):1864-77. PubMed ID: 21883587
[TBL] [Abstract][Full Text] [Related]
17. TaxI: a software tool for DNA barcoding using distance methods.
Steinke D; Vences M; Salzburger W; Meyer A
Philos Trans R Soc Lond B Biol Sci; 2005 Oct; 360(1462):1975-80. PubMed ID: 16214755
[TBL] [Abstract][Full Text] [Related]
18. DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success.
Meier R; Shiyang K; Vaidya G; Ng PK
Syst Biol; 2006 Oct; 55(5):715-28. PubMed ID: 17060194
[TBL] [Abstract][Full Text] [Related]
19. DNA Barcodes in Taxonomic Descriptions.
Brower AVZ; DeSalle R
Methods Mol Biol; 2024; 2744():105-115. PubMed ID: 38683313
[TBL] [Abstract][Full Text] [Related]
20. Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants.
Tanabe AS; Toju H
PLoS One; 2013; 8(10):e76910. PubMed ID: 24204702
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]