138 related articles for article (PubMed ID: 38683333)
1. Guidelines for the Analysis of DNA Barcoding/Metabarcoding Sequencing Data and Interpretation of Publicly Available Databases.
Damaso N; Elwick KE; Robertson JM
Methods Mol Biol; 2024; 2744():391-402. PubMed ID: 38683333
[TBL] [Abstract][Full Text] [Related]
2. Assessment of BOLD and GenBank - Their accuracy and reliability for the identification of biological materials.
Meiklejohn KA; Damaso N; Robertson JM
PLoS One; 2019; 14(6):e0217084. PubMed ID: 31216285
[TBL] [Abstract][Full Text] [Related]
3. Taxonomic identification accuracy from BOLD and GenBank databases using over a thousand insect DNA barcodes from Colombia.
Baena-Bejarano N; Reina C; Martínez-Revelo DE; Medina CA; Tovar E; Uribe-Soto S; Neita-Moreno JC; Gonzalez MA
PLoS One; 2023; 18(4):e0277379. PubMed ID: 37093820
[TBL] [Abstract][Full Text] [Related]
4. Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants.
Tanabe AS; Toju H
PLoS One; 2013; 8(10):e76910. PubMed ID: 24204702
[TBL] [Abstract][Full Text] [Related]
5. Identification of North Sea molluscs with DNA barcoding.
Barco A; Raupach MJ; Laakmann S; Neumann H; Knebelsberger T
Mol Ecol Resour; 2016 Jan; 16(1):288-97. PubMed ID: 26095230
[TBL] [Abstract][Full Text] [Related]
6. Curation of a reference database of COI sequences for insect identification through DNA metabarcoding: COins.
Magoga G; Forni G; Brunetti M; Meral A; Spada A; De Biase A; Montagna M
Database (Oxford); 2022 Jul; 2022():. PubMed ID: 35796594
[TBL] [Abstract][Full Text] [Related]
7. DNA Barcoding and Metabarcoding Protocols for Species Identification.
Elwick KE; Damaso N; Robertson JM
Methods Mol Biol; 2024; 2744():155-169. PubMed ID: 38683317
[TBL] [Abstract][Full Text] [Related]
8. The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data.
Lammers Y; Peelen T; Vos RA; Gravendeel B
BMC Bioinformatics; 2014 Feb; 15():44. PubMed ID: 24502833
[TBL] [Abstract][Full Text] [Related]
9. Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses.
Keck F; Couton M; Altermatt F
Mol Ecol Resour; 2023 May; 23(4):742-755. PubMed ID: 36478393
[TBL] [Abstract][Full Text] [Related]
10. Assessing the reliability of medicinal Dendrobium sequences in GenBank for botanical species identification.
Wu HY; Chan KT; But GW; Shaw PC
Sci Rep; 2021 Feb; 11(1):3439. PubMed ID: 33564041
[TBL] [Abstract][Full Text] [Related]
11. DNA Sequencing Technologies and DNA Barcoding.
David A; Deepa Arul Priya J; Gautam A
Methods Mol Biol; 2024; 2744():139-154. PubMed ID: 38683316
[TBL] [Abstract][Full Text] [Related]
12. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.
Nilsson RH; Larsson KH; Taylor AFS; Bengtsson-Palme J; Jeppesen TS; Schigel D; Kennedy P; Picard K; Glöckner FO; Tedersoo L; Saar I; Kõljalg U; Abarenkov K
Nucleic Acids Res; 2019 Jan; 47(D1):D259-D264. PubMed ID: 30371820
[TBL] [Abstract][Full Text] [Related]
13. funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model.
Meher PK; Sahu TK; Gahoi S; Tomar R; Rao AR
BMC Genet; 2019 Jan; 20(1):2. PubMed ID: 30616524
[TBL] [Abstract][Full Text] [Related]
14. Barcoding in the dark? A critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge.
Kvist S
Mol Phylogenet Evol; 2013 Oct; 69(1):39-45. PubMed ID: 23721749
[TBL] [Abstract][Full Text] [Related]
15. The practical evaluation of DNA barcode efficacy.
Spouge JL; Mariño-Ramírez L
Methods Mol Biol; 2012; 858():365-77. PubMed ID: 22684965
[TBL] [Abstract][Full Text] [Related]
16. DNA barcoding in plants: evolution and applications of in silico approaches and resources.
Bhargava M; Sharma A
Mol Phylogenet Evol; 2013 Jun; 67(3):631-41. PubMed ID: 23500333
[TBL] [Abstract][Full Text] [Related]
17. Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera.
Suwannasai N; Martín MP; Phosri C; Sihanonth P; Whalley AJ; Spouge JL
PLoS One; 2013; 8(2):e54529. PubMed ID: 23390499
[TBL] [Abstract][Full Text] [Related]
18. [Integrated DNA barcoding database for identifying Chinese animal medicine].
Shi LC; Yao H; Xie LF; Zhu YJ; Song JY; Zhang H; Chen SL
Zhongguo Zhong Yao Za Zhi; 2014 Jun; 39(12):2155-9. PubMed ID: 25244735
[TBL] [Abstract][Full Text] [Related]
19. RESCRIPt: Reproducible sequence taxonomy reference database management.
Robeson MS; O'Rourke DR; Kaehler BD; Ziemski M; Dillon MR; Foster JT; Bokulich NA
PLoS Comput Biol; 2021 Nov; 17(11):e1009581. PubMed ID: 34748542
[TBL] [Abstract][Full Text] [Related]
20. DNA bar-coding for phytoplasma identification.
Makarova O; Contaldo N; Paltrinieri S; Bertaccini A; Nyskjold H; Nicolaisen M
Methods Mol Biol; 2013; 938():301-17. PubMed ID: 22987426
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
