These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 38689238)

  • 1. Cold Spot SCANNER: Colab Notebook for predicting cold spots in protein-protein interfaces.
    Gurusinghe SNS; Shifman JM
    BMC Bioinformatics; 2024 Apr; 25(1):172. PubMed ID: 38689238
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Cold spots are universal in protein-protein interactions.
    Gurusinghe SNS; Oppenheimer B; Shifman JM
    Protein Sci; 2022 Oct; 31(10):e4435. PubMed ID: 36173158
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cold Spots in Protein Binding.
    Shirian J; Sharabi O; Shifman JM
    Trends Biochem Sci; 2016 Sep; 41(9):739-745. PubMed ID: 27477052
    [TBL] [Abstract][Full Text] [Related]  

  • 4. APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.
    Xia JF; Zhao XM; Song J; Huang DS
    BMC Bioinformatics; 2010 Apr; 11():174. PubMed ID: 20377884
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces.
    Ozdemir ES; Gursoy A; Keskin O
    Bioinformatics; 2018 Sep; 34(17):i795-i801. PubMed ID: 30423104
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
    Tuncbag N; Gursoy A; Keskin O
    Bioinformatics; 2009 Jun; 25(12):1513-20. PubMed ID: 19357097
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DBAC: a simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts.
    Li Z; Wong L; Li J
    BMC Syst Biol; 2011 Jun; 5 Suppl 1(Suppl 1):S5. PubMed ID: 21689480
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural conservation of druggable hot spots in protein-protein interfaces.
    Kozakov D; Hall DR; Chuang GY; Cencic R; Brenke R; Grove LE; Beglov D; Pelletier J; Whitty A; Vajda S
    Proc Natl Acad Sci U S A; 2011 Aug; 108(33):13528-33. PubMed ID: 21808046
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Prediction of hot spots in protein interfaces using a random forest model with hybrid features.
    Wang L; Liu ZP; Zhang XS; Chen L
    Protein Eng Des Sel; 2012 Mar; 25(3):119-26. PubMed ID: 22258275
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein subunit interfaces: A statistical analysis of hot spots in Sm proteins.
    Stojanović SD; Zarić BL; Zarić SD
    J Mol Model; 2010 Nov; 16(11):1743-51. PubMed ID: 20652820
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.
    Liu Q; Ren J; Song J; Li J
    PLoS One; 2015; 10(12):e0144486. PubMed ID: 26675422
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PredHS: a web server for predicting protein-protein interaction hot spots by using structural neighborhood properties.
    Deng L; Zhang QC; Chen Z; Meng Y; Guan J; Zhou S
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W290-5. PubMed ID: 24852252
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Relationship between hot spot residues and ligand binding hot spots in protein-protein interfaces.
    Zerbe BS; Hall DR; Vajda S; Whitty A; Kozakov D
    J Chem Inf Model; 2012 Aug; 52(8):2236-44. PubMed ID: 22770357
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Conserved residue clusters at protein-protein interfaces and their use in binding site identification.
    Guharoy M; Chakrabarti P
    BMC Bioinformatics; 2010 May; 11():286. PubMed ID: 20507585
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Characterization of Hydrophilic α-Helical Hot Spots on the Protein-Protein Interaction Interfaces for the Design of α-Helix Mimetics.
    Wang Z; Ji H
    J Chem Inf Model; 2022 Apr; 62(8):1873-1890. PubMed ID: 35385659
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PCRPi: Presaging Critical Residues in Protein interfaces, a new computational tool to chart hot spots in protein interfaces.
    Assi SA; Tanaka T; Rabbitts TH; Fernandez-Fuentes N
    Nucleic Acids Res; 2010 Apr; 38(6):e86. PubMed ID: 20008102
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Computational Investigation of Small-Molecule Engagement of Hot Spots at Protein-Protein Interaction Interfaces.
    Xu D; Si Y; Meroueh SO
    J Chem Inf Model; 2017 Sep; 57(9):2250-2272. PubMed ID: 28766941
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces.
    Burgoyne NJ; Jackson RM
    Bioinformatics; 2006 Jun; 22(11):1335-42. PubMed ID: 16522669
    [TBL] [Abstract][Full Text] [Related]  

  • 19. HotSprint: database of computational hot spots in protein interfaces.
    Guney E; Tuncbag N; Keskin O; Gursoy A
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D662-6. PubMed ID: 17959648
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein binding hot spots and the residue-residue pairing preference: a water exclusion perspective.
    Liu Q; Li J
    BMC Bioinformatics; 2010 May; 11():244. PubMed ID: 20462403
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.