187 related articles for article (PubMed ID: 38697116)
1. A CTCF-binding site in the Mdm1-Il22-Ifng locus shapes cytokine expression profiles and plays a critical role in early Th1 cell fate specification.
Liu C; Nagashima H; Fernando N; Bass V; Gopalakrishnan J; Signorella S; Montgomery W; Lim AI; Harrison O; Reich L; Yao C; Sun HW; Brooks SR; Jiang K; Nagarajan V; Zhao Y; Jung S; Phillips R; Mikami Y; Lareau CA; Kanno Y; Jankovic D; Aryee MJ; Pękowska A; Belkaid Y; O'Shea J; Shih HY
Immunity; 2024 May; 57(5):1005-1018.e7. PubMed ID: 38697116
[TBL] [Abstract][Full Text] [Related]
2. CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus.
Sekimata M; Pérez-Melgosa M; Miller SA; Weinmann AS; Sabo PJ; Sandstrom R; Dorschner MO; Stamatoyannopoulos JA; Wilson CB
Immunity; 2009 Oct; 31(4):551-64. PubMed ID: 19818655
[TBL] [Abstract][Full Text] [Related]
3. Multiple CTCF sites cooperate with each other to maintain a TAD for enhancer-promoter interaction in the β-globin locus.
Kang J; Kim YW; Park S; Kang Y; Kim A
FASEB J; 2021 Aug; 35(8):e21768. PubMed ID: 34245617
[TBL] [Abstract][Full Text] [Related]
4. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
Front Immunol; 2018; 9():425. PubMed ID: 29593713
[TBL] [Abstract][Full Text] [Related]
5. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
[TBL] [Abstract][Full Text] [Related]
6. Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Epigenetics Chromatin; 2020 Jul; 13(1):30. PubMed ID: 32680543
[TBL] [Abstract][Full Text] [Related]
7. CTCF-binding element regulates ESC differentiation via orchestrating long-range chromatin interaction between enhancers and HoxA.
Su G; Wang W; Chen J; Liu M; Zheng J; Guo D; Bi J; Zhao Z; Shi J; Zhang L; Lu W
J Biol Chem; 2021; 296():100413. PubMed ID: 33581110
[TBL] [Abstract][Full Text] [Related]
8. HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia.
Luo H; Zhu G; Eshelman MA; Fung TK; Lai Q; Wang F; Zeisig BB; Lesperance J; Ma X; Chen S; Cesari N; Cogle C; Chen B; Xu B; Yang FC; So CWE; Qiu Y; Xu M; Huang S
Mol Cell; 2022 Feb; 82(4):833-851.e11. PubMed ID: 35180428
[TBL] [Abstract][Full Text] [Related]
9. Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries.
Islam Z; Saravanan B; Walavalkar K; Farooq U; Singh AK; Radhakrishnan S; Thakur J; Pandit A; Henikoff S; Notani D
Genome Res; 2023 Jan; 33(1):1-17. PubMed ID: 36650052
[TBL] [Abstract][Full Text] [Related]
10. The human β-globin enhancer LCR HS2 plays a role in forming a TAD by activating chromatin structure at neighboring CTCF sites.
Kim J; Kang J; Kim YW; Kim A
FASEB J; 2021 Jun; 35(6):e21669. PubMed ID: 34033138
[TBL] [Abstract][Full Text] [Related]
11. Outward-oriented sites within clustered CTCF boundaries are key for intra-TAD chromatin interactions and gene regulation.
Ge X; Huang H; Han K; Xu W; Wang Z; Wu Q
Nat Commun; 2023 Dec; 14(1):8101. PubMed ID: 38062010
[TBL] [Abstract][Full Text] [Related]
12. Alteration of CTCF-associated chromatin neighborhood inhibits TAL1-driven oncogenic transcription program and leukemogenesis.
Li Y; Liao Z; Luo H; Benyoucef A; Kang Y; Lai Q; Dovat S; Miller B; Chepelev I; Li Y; Zhao K; Brand M; Huang S
Nucleic Acids Res; 2020 Apr; 48(6):3119-3133. PubMed ID: 32086528
[TBL] [Abstract][Full Text] [Related]
13. Facultative CTCF sites moderate mammary super-enhancer activity and regulate juxtaposed gene in non-mammary cells.
Willi M; Yoo KH; Reinisch F; Kuhns TM; Lee HK; Wang C; Hennighausen L
Nat Commun; 2017 Jul; 8():16069. PubMed ID: 28714474
[TBL] [Abstract][Full Text] [Related]
14. Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation.
Kubo N; Ishii H; Xiong X; Bianco S; Meitinger F; Hu R; Hocker JD; Conte M; Gorkin D; Yu M; Li B; Dixon JR; Hu M; Nicodemi M; Zhao H; Ren B
Nat Struct Mol Biol; 2021 Feb; 28(2):152-161. PubMed ID: 33398174
[TBL] [Abstract][Full Text] [Related]
15. A role of the CTCF binding site at enhancer Eα in the dynamic chromatin organization of the Tcra-Tcrd locus.
Zhao H; Li Z; Zhu Y; Bian S; Zhang Y; Qin L; Naik AK; He J; Zhang Z; Krangel MS; Hao B
Nucleic Acids Res; 2020 Sep; 48(17):9621-9636. PubMed ID: 32853367
[TBL] [Abstract][Full Text] [Related]
16. Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains.
Khoury A; Achinger-Kawecka J; Bert SA; Smith GC; French HJ; Luu PL; Peters TJ; Du Q; Parry AJ; Valdes-Mora F; Taberlay PC; Stirzaker C; Statham AL; Clark SJ
Nat Commun; 2020 Jan; 11(1):54. PubMed ID: 31911579
[TBL] [Abstract][Full Text] [Related]
17. Lineage-specific adjacent IFNG and IL26 genes share a common distal enhancer element.
Collins PL; Henderson MA; Aune TM
Genes Immun; 2012 Sep; 13(6):481-8. PubMed ID: 22622197
[TBL] [Abstract][Full Text] [Related]
18. Chromatin topology and the timing of enhancer function at the
Rodríguez-Carballo E; Lopez-Delisle L; Willemin A; Beccari L; Gitto S; Mascrez B; Duboule D
Proc Natl Acad Sci U S A; 2020 Dec; 117(49):31231-31241. PubMed ID: 33229569
[TBL] [Abstract][Full Text] [Related]
19. Three-dimensional chromatin landscapes in T cell acute lymphoblastic leukemia.
Kloetgen A; Thandapani P; Ntziachristos P; Ghebrechristos Y; Nomikou S; Lazaris C; Chen X; Hu H; Bakogianni S; Wang J; Fu Y; Boccalatte F; Zhong H; Paietta E; Trimarchi T; Zhu Y; Van Vlierberghe P; Inghirami GG; Lionnet T; Aifantis I; Tsirigos A
Nat Genet; 2020 Apr; 52(4):388-400. PubMed ID: 32203470
[TBL] [Abstract][Full Text] [Related]
20. Specific Contributions of Cohesin-SA1 and Cohesin-SA2 to TADs and Polycomb Domains in Embryonic Stem Cells.
Cuadrado A; Giménez-Llorente D; Kojic A; Rodríguez-Corsino M; Cuartero Y; Martín-Serrano G; Gómez-López G; Marti-Renom MA; Losada A
Cell Rep; 2019 Jun; 27(12):3500-3510.e4. PubMed ID: 31216471
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]