These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 38701418)

  • 21. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
    Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
    BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
    [TBL] [Abstract][Full Text] [Related]  

  • 22. The GEM mapper: fast, accurate and versatile alignment by filtration.
    Marco-Sola S; Sammeth M; Guigó R; Ribeca P
    Nat Methods; 2012 Dec; 9(12):1185-8. PubMed ID: 23103880
    [TBL] [Abstract][Full Text] [Related]  

  • 23. NanoSim: nanopore sequence read simulator based on statistical characterization.
    Yang C; Chu J; Warren RL; Birol I
    Gigascience; 2017 Apr; 6(4):1-6. PubMed ID: 28327957
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Unravelling reference bias in ancient DNA datasets.
    Dolenz S; van der Valk T; Jin C; Oppenheimer J; Sharif MB; Orlando L; Shapiro B; Dalén L; Heintzman PD
    Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38960861
    [TBL] [Abstract][Full Text] [Related]  

  • 25. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality.
    Wu TD; Reeder J; Lawrence M; Becker G; Brauer MJ
    Methods Mol Biol; 2016; 1418():283-334. PubMed ID: 27008021
    [TBL] [Abstract][Full Text] [Related]  

  • 26. ReadXplorer--visualization and analysis of mapped sequences.
    Hilker R; Stadermann KB; Doppmeier D; Kalinowski J; Stoye J; Straube J; Winnebald J; Goesmann A
    Bioinformatics; 2014 Aug; 30(16):2247-54. PubMed ID: 24790157
    [TBL] [Abstract][Full Text] [Related]  

  • 27. iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
    Dharanipragada P; Vogeti S; Parekh N
    PLoS One; 2018; 13(4):e0195334. PubMed ID: 29621297
    [TBL] [Abstract][Full Text] [Related]  

  • 28. SCALCE: boosting sequence compression algorithms using locally consistent encoding.
    Hach F; Numanagic I; Alkan C; Sahinalp SC
    Bioinformatics; 2012 Dec; 28(23):3051-7. PubMed ID: 23047557
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CrossMap: a versatile tool for coordinate conversion between genome assemblies.
    Zhao H; Sun Z; Wang J; Huang H; Kocher JP; Wang L
    Bioinformatics; 2014 Apr; 30(7):1006-7. PubMed ID: 24351709
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Improving transmission efficiency of large sequence alignment/map (SAM) files.
    Sakib MN; Tang J; Zheng WJ; Huang CT
    PLoS One; 2011; 6(12):e28251. PubMed ID: 22164252
    [TBL] [Abstract][Full Text] [Related]  

  • 31. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
    Wang C; Evans JM; Bhagwate AV; Prodduturi N; Sarangi V; Middha M; Sicotte H; Vedell PT; Hart SN; Oliver GR; Kocher JP; Maurer MJ; Novak AJ; Slager SL; Cerhan JR; Asmann YW
    Bioinformatics; 2014 Sep; 30(18):2678-80. PubMed ID: 24876377
    [TBL] [Abstract][Full Text] [Related]  

  • 32. DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly.
    Scheinin I; Sie D; Bengtsson H; van de Wiel MA; Olshen AB; van Thuijl HF; van Essen HF; Eijk PP; Rustenburg F; Meijer GA; Reijneveld JC; Wesseling P; Pinkel D; Albertson DG; Ylstra B
    Genome Res; 2014 Dec; 24(12):2022-32. PubMed ID: 25236618
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Long read alignment based on maximal exact match seeds.
    Liu Y; Schmidt B
    Bioinformatics; 2012 Sep; 28(18):i318-i324. PubMed ID: 22962447
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A fast read alignment method based on seed-and-vote for next generation sequencing.
    Liu S; Wang Y; Wang F
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):466. PubMed ID: 28155631
    [TBL] [Abstract][Full Text] [Related]  

  • 35. SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.
    Pattnaik S; Gupta S; Rao AA; Panda B
    BMC Bioinformatics; 2014 Feb; 15():40. PubMed ID: 24495296
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Accurate estimation of short read mapping quality for next-generation genome sequencing.
    Ruffalo M; Koyutürk M; Ray S; LaFramboise T
    Bioinformatics; 2012 Sep; 28(18):i349-i355. PubMed ID: 22962451
    [TBL] [Abstract][Full Text] [Related]  

  • 37. GSAlign: an efficient sequence alignment tool for intra-species genomes.
    Lin HN; Hsu WL
    BMC Genomics; 2020 Feb; 21(1):182. PubMed ID: 32093618
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Ultrafast SNP analysis using the Burrows-Wheeler transform of short-read data.
    Kimura K; Koike A
    Bioinformatics; 2015 May; 31(10):1577-83. PubMed ID: 25609790
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Bazam: a rapid method for read extraction and realignment of high-throughput sequencing data.
    Sadedin SP; Oshlack A
    Genome Biol; 2019 Apr; 20(1):78. PubMed ID: 30999943
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Evaluation and comparison of multiple aligners for next-generation sequencing data analysis.
    Shang J; Zhu F; Vongsangnak W; Tang Y; Zhang W; Shen B
    Biomed Res Int; 2014; 2014():309650. PubMed ID: 24779008
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.